RnoINT0010357 @ rn6
Intron Retention
Gene
ENSRNOG00000012939 | Abca7
Description
ATP binding cassette subfamily A member 7 [Source:RGD Symbol;Acc:1303134]
Coordinates
chr7:12754869-12755653:-
Coord C1 exon
chr7:12755452-12755653
Coord A exon
chr7:12754980-12755451
Coord C2 exon
chr7:12754869-12754979
Length
472 bp
Sequences
Splice sites
5' ss Seq
CAGGTGGGC
5' ss Score
8.07
3' ss Seq
CGAGAGTCACTTTCCACCAGGCC
3' ss Score
3.23
Exon sequences
Seq C1 exon
AGCCTGCTGTCCCCCGTGGCCTTTGGCTTTGGATGCGAGAGCCTGGCTCTACTGGAGGAGCAGGGGGACGGGGCTCAGTGGCACAATTTGGGCACAGGCCCGGCGGAGGATGTCTTCAGCCTGGCACAGGTGTCTGCCTTCTTGTTGCTTGATGCTGTCATCTACGGCCTTGCCCTCTGGTACCTAGAGGCTGTATGCCCAG
Seq A exon
GTGGGCCATAGCGGAAGGGTCTGGGGTGGGGAACACACATGCACACTGGAGGCCAAGATGGAGTATGGCTGGGCCCACGGAGAGATGTTTTAGGTTGTGCGTCTGGGATATTGTGCTCCTAGAGGCCTGTCTGGATGAGAAGGCAGGACGCCGAGGCTAGAATGCAGAGCTGGCCTCCTGCTGCTTGGTGTCTGAGAACAGCCTGCTTTAGAATACCGCCCCCAGAGGCAGAGCTTCCGGCTGGAGTCCCTCACTAGCCTGGCACACAACAGATCATATTTTAGGGTGTGTCACCGGGATATTGGGTTCCTGGAAGTCATTTCCTAGCGGATGCTGTCTCTGAGGAGCAGAGATTGAGGGAGAAGGCTGGGCTTCTTGGTCACTCTTCCTGGATGCGCTGACTCCCAGTGTGTAACCAGAAGTCCTCACATCTCACGGGTATTACACGTAACCGAGAGTCACTTTCCACCAG
Seq C2 exon
GCCAGTATGGAATCCCTGAACCATGGAATTTCCCCTTTCGGAGGAGCTACTGGTGTGGCCCTGGACCTCCCAAGAGTTCTGTCTTGGCCCCTGCCCCACAAGATCCCAAGG
VastDB Features
Vast-tools module Information
Secondary ID
ENSRNOG00000012939:ENSRNOT00000064886:16
Average complexity
IR
Mappability confidence:
NA
Protein Impact
ORF disruption upon sequence inclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=NA C2=0.184
Domain overlap (PFAM):
C1:
PF126982=ABC2_membrane_3=PD(25.1=88.2)
A:
NA
C2:
NO
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
CTGTCCCCCGTGGCCTTT
R:
CTTGGGATCTTGTGGGGCAG
Band lengths:
306-778
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]