DreINT0000124 @ danRer10
Intron Retention
Gene
ENSDARG00000074221 | ABCA7
Description
ATP-binding cassette, sub-family A (ABC1), member 7 [Source:HGNC Symbol;Acc:HGNC:37]
Coordinates
chr11:5673436-5675375:+
Coord C1 exon
chr11:5673436-5673640
Coord A exon
chr11:5673641-5675261
Coord C2 exon
chr11:5675262-5675375
Length
1621 bp
Sequences
Splice sites
5' ss Seq
CAGGTAACG
5' ss Score
10.52
3' ss Seq
GCAATAATATTGTATTCCAGGGC
3' ss Score
6.98
Exon sequences
Seq C1 exon
AGCTTCCTGTCTCCTGTGGCCTTTGGTTTTGGCTGTGAGTATTTCTCTCAGTATGAAGAGCAGGGTGTGGGGATCCAGTGGTTTAACTTGAAATCCAGCCCCATGGAGGGAGACACCTACAGCTTCAACACCTCCATCATGATGCTGTATGCAGATGCTCTAATCTATGCACTGGCCACTTGGTACATTGAAGCTGTCTTTCCAG
Seq A exon
GTAACGCATCCTCCTGTGACAAATTGCAAAGTCAGACATATATAATTCCAACTGTGTCTCTTTTTGATCTCTTAATGTGGATTTTGGGGATTCATCAATTGCTGTGAACAAGGGATTTGTGTTGGTAGGATTATGTTTGTGTTTTGGAAAGAAGTAGTGCTCTAATGCTCTAATGTAAAACACTAATATTGTGATTTTTTTTAAATATACAAATACACTCACCGGCCGTTTTTTAAGGTACACCTGTCCAACTGCTTGTTAACGCAAATTTTTTTAATCAGCCAATCAGATGGCATGTAGACATGGTCAAGACAGTCTGCTGCAGATCAAACCGAGCATCAGATTGGGGAAGAAAGGGGGTTTAAGTGAATTTGAACATGGCATGGTCGTTAGTGCCAGACAGGCTGGTCTGAGTATTTCAGAAACTGCTGATCTACTGGGATTTTCAACGCAAATGCCTTGTTGATGCCAGAGGTCAGAGGAGAATGGCCACTCATTACAACCGAGATATGCAGAAGAGCATCTCTGAACACACAAAACAAGAATCTTGTTGCGGATAGGCTACAGAAGCAGAAGACCACACCATGTGCCACTACGGTCAGCTAAGAACTGAGGCTTCAATTCACACAGGCTCACCAAAATTGGACAATAGAAGATTGGAAAAACATTGCCTGGTCTAATGAGTCTCGATTTCTGCTGTGACAATCGGATGATAGGGTCAGAATTTGGCATTAATAACATAAAAGCATGCATCCATCCTCCCTAATGGTTCAGGCTGGTTGTGGTGGTGTAATAGTGCGGCGGATATTTTCTTGGCACACTTTAGGCCAGTGGTTCTCAACTAGTTTGGCCATGGGACCCACATTTGTATTTAGTCATCAGGTCCATAGTCATCAGCGACCTAAATTTTTAGGAACTATAATATAATTTTAGGAATTATAATTCATTTGTATTTATTTGTTAACATGCACACGTAGTGACAGATAAATCATAAGAAAATCACTAAGGCTTACAAATAAACAATACTTTATTGCTGTCATTTAACAAAATGCATCAAATTATAGTAAAGTTCAGTTGTCACACACGGATTTCAAAATAAAAGTCTGATATAAGCAAAAAAAGTAAAAAATTTAATTTTAGTTGTCTTTTTGACTACACACTCCGCGACCCACTGAAAATGTTCCCGCGACCCACTTTTGGGTCACGACCCACCAGTTGAGAAACACTGCTTTAGGCCCATTAATTCCAATTGAGCATCATGTCAACACCACAGCCTACCTGAGTATTGTTGCTGAACATGTCCATTCGCTTCTGATGAGGGGCTGAATATCCACTCAGCAATTCCAGCTGCTGTCTGGGCTTTCACTGCCTATTTTACTCCTGGTTTCATCATGTGTTCGATACTTTTACACATACCTTAATTTCTAAACAAATTACAAACAAAGAAATTAGTTGATTCTTTTCTTTGTATGAATGAAGTCAACAGAACCTATAGAAATATGTTTTCTGAGAAAAATGGTGATGTGTTCAACACTTTTTTAACACGCTGCTGATGTTCATGCCTGTTACCATGGTTGAATTAGCCTGTGTGTAAAAACTGTGCAATAATATTGTATTCCAG
Seq C2 exon
GGCAGTATGGCATTCCCAGACCTTGGTATTTTATCTTCCAGCTGAATTACTGGGGTGGGGTTCCCTTAGAGTTGGGATTACCCATTCCTCCAGCACCTAGAGAGGAACAAGATG
VastDB Features
Vast-tools module Information
Secondary ID
ENSDARG00000074221:ENSDART00000165385:15
Average complexity
IR
Mappability confidence:
NA
Protein Impact
ORF disruption upon sequence inclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=NA C2=0.077
Domain overlap (PFAM):
C1:
PF126982=ABC2_membrane_3=PD(19.1=88.4)
A:
NA
C2:
NO
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Associated events
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
AGCTTCCTGTCTCCTGTGGC
R:
CATCTTGTTCCTCTCTAGGTGCTG
Band lengths:
319-1940
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]