GgaINT1005122 @ galGal4
Intron Retention
Gene
ENSGALG00000002453 | ABCA7
Description
ATP-binding cassette, sub-family A (ABC1), member 7 [Source:HGNC Symbol;Acc:HGNC:37]
Coordinates
chr28:2830799-2831200:-
Coord C1 exon
chr28:2830996-2831200
Coord A exon
chr28:2830916-2830995
Coord C2 exon
chr28:2830799-2830915
Length
80 bp
Sequences
Splice sites
5' ss Seq
CAGGTGAGT
5' ss Score
10.67
3' ss Seq
CCCTGTGTCCCTGCCTACAGGCC
3' ss Score
11.45
Exon sequences
Seq C1 exon
AGCCTGCTGTCCCCAGTGGCCTTTGGCTTTGGTTGTGAGTACTTCTCGCTGTACGAGGAGCAGGGGGTGGGCATGCAGTGGTACAACTTGGGCATCAGCCCTGTGCCGGGAGACCCCTACAGCTTCGCCATGGCCATGGGGCTGCTGCTGCTGGACGCTGTCCTCTATGGGCTGGCAGCCTGGTACATCGAGGGTGTCCTCCCAG
Seq A exon
GTGAGTGCAGAGCTTCTGCCCCTTGCAGCCCTTTGCCAGCCCTGCTGGGCCCTGCTCAGCCCCTGTGTCCCTGCCTACAG
Seq C2 exon
GCCAGTACGGGATCCCCAAGCCCTGGAATTTCCCCTTCCTGAAGAGCTACTGGTTTGGAGAGCCACCCTCAGCCGGATACCCTCCGTACCCCAGCGGTCCTCATGCTGCACCCCAAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSGALG00000002453:ENSGALT00000003869:12
Average complexity
IR
Mappability confidence:
NA
Protein Impact
ORF disruption upon sequence inclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=NA C2=0.050
Domain overlap (PFAM):
C1:
PF126982=ABC2_membrane_3=PD(25.4=88.4)
A:
NA
C2:
NO
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
GCAGTGGTACAACTTGGGCAT
R:
AAGGGGAAATTCCAGGGCTTG
Band lengths:
168-248
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]