BtaINT0011192 @ bosTau6
Intron Retention
Gene
ENSBTAG00000020766 | ABCA7
Description
ATP-binding cassette, sub-family A (ABC1), member 7 [Source:HGNC Symbol;Acc:HGNC:37]
Coordinates
chr7:45173965-45174299:+
Coord C1 exon
chr7:45173965-45174069
Coord A exon
chr7:45174070-45174144
Coord C2 exon
chr7:45174145-45174299
Length
75 bp
Sequences
Splice sites
5' ss Seq
TGGGTGAGT
5' ss Score
8.73
3' ss Seq
GACCTTCCCATCCCCCACAGTTG
3' ss Score
9.41
Exon sequences
Seq C1 exon
ATGGTAGGCCCAGGCAGGGCCCGTGCTTGGGTATTGCTCATCCCGATGCGACTAGGAAGCTCCAGGTTCCGCCAGAAGAGACAGCCTTGGAGAATGGAGGGCTGG
Seq A exon
GTGAGTTGTCCCTGCCCCACCCTGTGGCCCTTCCTGGTCCCCAGGGCCGAGCACTGACCTTCCCATCCCCCACAG
Seq C2 exon
TTGGCTCTGCCCCTGAGACACAGGCACTACAGGGCTCTGGGCCGACCACCGCAGGCCTCGTACACAGCTGGGCGCTCACCTACCAGCAACTCCGGGCCTTACTTCTCAAGCGTTTCCTGCTTGCCCGCCGCAGCCGCCGTGGCCTGTTTGCTCAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSBTAG00000020766:ENSBTAT00000020083:25
Average complexity
IR
Mappability confidence:
NA
Protein Impact
Alternative protein isoforms
No structure available
Features
Disorder rate (Iupred):
C1=0.528 A=NA C2=0.173
Domain overlap (PFAM):
C1:
NO
A:
NA
C2:
NO
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
CTCATCCCGATGCGACTAGGA
R:
TGAGAAGTAAGGCCCGGAGTT
Band lengths:
177-252
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]