HsaINT0000800 @ hg38
Intron Retention
Gene
ENSG00000064687 | ABCA7
Description
ATP binding cassette subfamily A member 7 [Source:HGNC Symbol;Acc:HGNC:37]
Coordinates
chr19:1054006-1054341:+
Coord C1 exon
chr19:1054006-1054110
Coord A exon
chr19:1054111-1054192
Coord C2 exon
chr19:1054193-1054341
Length
82 bp
Sequences
Splice sites
5' ss Seq
CAGGTAAGT
5' ss Score
10.86
3' ss Seq
GACCCTCTCATCCCTCACAGCTG
3' ss Score
9.82
Exon sequences
Seq C1 exon
ATGGCAGCTGCGGGCAGCACCTATGCACAGGCATTGCTGGCCTAGACGTAACCCTACGGCTCAAGATGCCGCCACAGGAGACAGCGCTGGAGAACGGGGAACCAG
Seq A exon
GTAAGTCCTTCCCAGTGGCCCTGGGGTCCTCCCAGCCACCCCCCCACAGCAGCGTGAGCACTGACCCTCTCATCCCTCACAG
Seq C2 exon
CTGGGTCAGCCCCAGAGACTGACCAGGGCTCTGGGCCAGACGCCGTGGGCCGGGTACAGGGCTGGGCACTGACCCGCCAGCAGCTCCAGGCCCTGCTTCTCAAGCGCTTTCTGCTTGCCCGCCGCAGCCGCCGCGGCCTGTTCGCCCAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSG00000064687:ENST00000433129:25
Average complexity
IR
Mappability confidence:
NA
Protein Impact
ORF disruption upon sequence inclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.324 A=NA C2=0.307
Domain overlap (PFAM):
C1:
NO
A:
NA
C2:
NO
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Associated events
Other assemblies
Conservation
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
GCTGGCCTAGACGTAACCCTA
R:
CTTGAGAAGCAGGGCCTGGAG
Band lengths:
174-256
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Autistic and control brains
- Pre-implantation embryo development