BtaINT0011209 @ bosTau6
Intron Retention
Gene
ENSBTAG00000020766 | ABCA7
Description
ATP-binding cassette, sub-family A (ABC1), member 7 [Source:HGNC Symbol;Acc:HGNC:37]
Coordinates
chr7:45179463-45179929:+
Coord C1 exon
chr7:45179463-45179569
Coord A exon
chr7:45179570-45179787
Coord C2 exon
chr7:45179788-45179929
Length
218 bp
Sequences
Splice sites
5' ss Seq
CAGGTGAGG
5' ss Score
10.07
3' ss Seq
CCCCCATCCCCCATCCCCAGCGT
3' ss Score
8.13
Exon sequences
Seq C1 exon
TGTTTCGGGCTGCTGGGCGTGAACGGAGCAGGGAAAACATCCACATTCCGCATGGTGACTGGGGACACGCTGCCCAGTGGGGGTGAGGCCATTCTGGAAGGCCACAG
Seq A exon
GTGAGGGGCTCCTGGGCTCTTGTTCCTCCCCACCTTCCCCTGCTCTCGCATATATGGACAGGATCAGCCTGGCCTTGAGTCCCCCTGCAATGGACCCGGCCCTGAGTTACCTCCTGTCCCTTATCAGGGTGGGTGAGCCCCAAGGCCCCTGCTTGCCCCTCGCATGGCCAGGGCCAGCCAGTGCCCTGAGTTCCCTGTCCCCCATCCCCCATCCCCAG
Seq C2 exon
CGTGGCCCAGGAACCGGCTGCAGCTCACCGCCGCATGGGCTACTGCCCTCAGTCGGATGCCATCTTCGAGCTGCTGACCGGTCGTGAGCACCTGGAGCTGTATGCACGCCTGCGAGGAGTCCCCGAAGCCCAAGTTGCCCAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSBTAG00000020766:ENSBTAT00000020083:40
Average complexity
IR
Mappability confidence:
NA
Protein Impact
ORF disruption upon sequence inclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.306 A=NA C2=0.167
Domain overlap (PFAM):
C1:
PF0000522=ABC_tran=FE(24.1=100)
A:
NA
C2:
PF0000522=ABC_tran=FE(32.4=100)
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
TGGGCGTGAACGGAGCAG
R:
CTGGGCAACTTGGGCTTCG
Band lengths:
236-454
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]