GgaINT0144874 @ galGal4
Intron Retention
Gene
ENSGALG00000002453 | ABCA7
Description
ATP-binding cassette, sub-family A (ABC1), member 7 [Source:HGNC Symbol;Acc:HGNC:37]
Coordinates
chr28:2824374-2824849:-
Coord C1 exon
chr28:2824743-2824849
Coord A exon
chr28:2824516-2824742
Coord C2 exon
chr28:2824374-2824515
Length
227 bp
Sequences
Splice sites
5' ss Seq
CAGGTGGGA
5' ss Score
6.71
3' ss Seq
CACCATGTCCCATCCTGCAGCGT
3' ss Score
8.45
Exon sequences
Seq C1 exon
TGCTTCGGGCTGCTGGGGGTGAACGGTGCAGGGAAGACATCCACCTTCAAGATGCTGACGGGGGACACCGAAGTGACGCTGGGGGAGGCCTGGCTGAAGGGACACAG
Seq A exon
GTGGGAGCATAGGCACCATCATCCCTCCTCACCATCTGCTCACACTTACCCTCCTCCCTACAGCCTGCGTGCTGGCTTCTTCATCCTCATCCTCATCTTCATCCCTGCAGTTCGCTCATTCCTAACCCTGCTGCATGCTCAGCCTCACCCTTGTCCCCGCAGCTTGTCCCTGGTTCCTGCAGCTTGCCCCTCGTCCCACAGCGTACTCACCATGTCCCATCCTGCAG
Seq C2 exon
CGTGCTCACCGACCTGCAGGCTGTCCATCAGAACATGGGGTACTGCCCGCAGTTTGATGCCATCACGGAGCTGCTGACGGGAAGGGAGCATCTGCAGTTCTACAGCCGTCTGCGTGGGGTGCCGGAGGAGGAGACCCCCAGG
VastDB Features
Vast-tools module Information
Secondary ID
ENSGALG00000002453:ENSGALT00000003869:38
Average complexity
IR
Mappability confidence:
NA
Protein Impact
ORF disruption upon sequence inclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=NA C2=0.000
Domain overlap (PFAM):
C1:
PF0000522=ABC_tran=FE(24.1=100)
A:
NA
C2:
PF0000522=ABC_tran=FE(32.4=100)
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
CTGCTGGGGGTGAACGGT
R:
CCTGGGGGTCTCCTCCTC
Band lengths:
240-467
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]