RnoINT0010385 @ rn6
Intron Retention
Gene
ENSRNOG00000012939 | Abca7
Description
ATP binding cassette subfamily A member 7 [Source:RGD Symbol;Acc:1303134]
Coordinates
chr7:12744209-12744652:-
Coord C1 exon
chr7:12744546-12744652
Coord A exon
chr7:12744351-12744545
Coord C2 exon
chr7:12744209-12744350
Length
195 bp
Sequences
Splice sites
5' ss Seq
CAAGTAAGA
5' ss Score
7.61
3' ss Seq
ACTTCCTGCCCCCACCACAGTGT
3' ss Score
6.84
Exon sequences
Seq C1 exon
TGTTTCGGGCTGCTGGGTGTCAATGGGGCAGGGAAGACATCCACCTTCCGCATGGTGACGGGGGACACGCTGCCCAGCAGTGGTGAAGCAGTGCTGGCAGGCCACAA
Seq A exon
GTAAGATTCTCTTTGTACCCTGACCTATCCCATTTGTCCCTTGAGTGAACATGGTCCTTCACCAGCCTAGTCCCTGGGACCTGCACCCCTCTGTGCATGGCCCACATGCCCTAAGACTCCTGTGCTTTCCGCAGACACTCATGCAAACCTGCGTGGGTGGCCTGTAAGCTCTTTAACTTCCTGCCCCCACCACAG
Seq C2 exon
TGTGGCCCAGGAGCCGTCTGCTGCGCACCGCAGCATGGGCTACTGTCCCCAGTCTGATGCCATCTTCGACCTGCTGACCGGCCGGGAACATCTAGAACTGTTTGCGCGCCTGCGCGGGGTGCCCGAGGCCCAAGTTGCCCAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSRNOG00000012939:ENSRNOT00000064886:41
Average complexity
IR
Mappability confidence:
NA
Protein Impact
ORF disruption upon sequence inclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.361 A=NA C2=0.167
Domain overlap (PFAM):
C1:
PF0000522=ABC_tran=FE(24.1=100)
A:
NA
C2:
PF0000522=ABC_tran=FE(32.4=100)
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
GTTTCGGGCTGCTGGGTG
R:
CAGGCGCGCAAACAGTTCTAG
Band lengths:
218-413
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]