BtaINT0011211 @ bosTau6
Intron Retention
Gene
ENSBTAG00000020766 | ABCA7
Description
ATP-binding cassette, sub-family A (ABC1), member 7 [Source:HGNC Symbol;Acc:HGNC:37]
Coordinates
chr7:45180611-45180923:+
Coord C1 exon
chr7:45180611-45180745
Coord A exon
chr7:45180746-45180819
Coord C2 exon
chr7:45180820-45180923
Length
74 bp
Sequences
Splice sites
5' ss Seq
CTGGTATGT
5' ss Score
8.14
3' ss Seq
TCTCCCTGCTCTGCGCCCAGGAC
3' ss Score
9.18
Exon sequences
Seq C1 exon
ACAGCAAGCTACGGCCTGGCACGCCTGGGCCTCTCTCAGTATGCTGACCAGCCCGCTGGCACCTACAGCGGGGGCAACAAGCGGAAGCTGGCGACAGCCGTGGCTCTGGTGGGGGACCCGGCTTTAGTCTTTCTG
Seq A exon
GTATGTGTGTGAGGATGGGAGGACAGAGGAGGGGGAAGGGGCCGCATTTAAGCATCTCCCTGCTCTGCGCCCAG
Seq C2 exon
GACGAGCCGACCACTGGCATGGACCCTGGTGCCCGGCGGTTCCTCTGGAACAGTCTTCTGGCCGTGGTGCAGGAGGGCCGCTCCGTGGTTCTCACCTCACACAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSBTAG00000020766:ENSBTAT00000020083:42
Average complexity
IR
Mappability confidence:
NA
Protein Impact
ORF disruption upon sequence inclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=NA C2=0.000
Domain overlap (PFAM):
C1:
PF0000522=ABC_tran=FE(30.3=100)
A:
NA
C2:
PF0000522=ABC_tran=PD(2.8=11.4)
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
CTGGGCCTCTCTCAGTATGCT
R:
GCCAGAAGACTGTTCCAGAGG
Band lengths:
173-247
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]