RnoINT0010387 @ rn6
Intron Retention
Gene
ENSRNOG00000012939 | Abca7
Description
ATP binding cassette subfamily A member 7 [Source:RGD Symbol;Acc:1303134]
Coordinates
chr7:12743635-12744126:-
Coord C1 exon
chr7:12743992-12744126
Coord A exon
chr7:12743739-12743991
Coord C2 exon
chr7:12743635-12743738
Length
253 bp
Sequences
Splice sites
5' ss Seq
CTGGTGCGT
5' ss Score
8.29
3' ss Seq
AGACCGTATCTCCTTTGCAGGAC
3' ss Score
9.42
Exon sequences
Seq C1 exon
ACAGCGCTCTCTGGCCTGGTGCGCCTGGGCCTTCCTAGCTACGCAGACCGACCCGCGGGTACCTACAGCGGAGGCAACAAACGGAAGCTGGCGACAGCTCTGGCTCTGGTTGGTGATCCAGCAGTGGTCTTTCTG
Seq A exon
GTGCGTGAAGGCGGGATCTGAGTGGGTTGTGGGTGGGAACAGAGTGACTGGGGCCGAGCCTTAATGAACTGGGGTCTGAGCTCGTGGAGGCCTTAGGGGAGATGCCTGTGCAAAACCTGGCCTCATTTGGGCTTCACCTAAGCAGAGTCTGATTGAAGTGTGCTCTAGCTTAGACAGGACGGAGCCCTAGTGGGCAGGCTTTGAGGCTGTCACTGCGGTCCCATCTGGCTCAGAGACCGTATCTCCTTTGCAG
Seq C2 exon
GACGAGCCCACCACAGGCATGGACCCAAGTGCGCGGCGATTTCTTTGGAACAACTTGCTGTCCGTGGTGCGTGAGGGCCGCTCCGTAGTGCTCACGTCGCACAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSRNOG00000012939:ENSRNOT00000064886:43
Average complexity
IR
Mappability confidence:
NA
Protein Impact
ORF disruption upon sequence inclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.022 A=NA C2=0.029
Domain overlap (PFAM):
C1:
PF0000522=ABC_tran=FE(30.3=100)
A:
NA
C2:
PF0000522=ABC_tran=PD(2.8=11.4)
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
ACAGCGCTCTCTGGCCTG
R:
TGCGACGTGAGCACTACGG
Band lengths:
236-489
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]