GgaINT0144876 @ galGal3
Intron Retention
Gene
ENSGALG00000002453 | ABCA7
Description
NA
Coordinates
chr28:2377894-2378204:-
Coord C1 exon
chr28:2378070-2378204
Coord A exon
chr28:2377998-2378069
Coord C2 exon
chr28:2377894-2377997
Length
72 bp
Sequences
Splice sites
5' ss Seq
CTGGTCAGT
5' ss Score
6.6
3' ss Seq
GGCTGACGCTGTGGCTGCAGGAT
3' ss Score
4.32
Exon sequences
Seq C1 exon
GTGGCTCAGTGGGGCATTGCCAAGCTGGGTTTGGGACCACATGCAGACCGCCTGGCAGGCACATATAGTGGGGGCAACAAGCGTAAGCTGTCCACGGCCATCGCCCTGCTCGGCAGCCCCCCCATCATCTTCCTG
Seq A exon
GTCAGTGGGGCAGTGGGGGGGGATGGCGGCCGTGGGGCAGGACTCGACGGGGGGCTGACGCTGTGGCTGCAG
Seq C2 exon
GATGAGCCCACGACGGGGATGGACCCACGAGCCCGACGCTTCCTGTGGGACTGCATCCTCAGCCTGGTCAGGGAGGGCCGCTCTGTGCTGCTCACATCCCACAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSGALG00000002453:ENSGALT00000003869:24
Average complexity
IR
Mappability confidence:
NA
Protein Impact
Alternative protein isoforms
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=NA C2=0.014
Domain overlap (PFAM):
C1:
PF0000522=ABC_tran=FE(30.3=100)
A:
NA
C2:
PF0000522=ABC_tran=PD(2.8=11.4)
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Associated events
Other assemblies
Conservation
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
GCATTGCCAAGCTGGGTTTG
R:
GATGCAGTCCCACAGGAAGC
Band lengths:
179-251
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]