BtaINT0011220 @ bosTau6
Intron Retention
Gene
ENSBTAG00000006896 | ABCA9
Description
ATP-binding cassette, sub-family A (ABC1), member 9 [Source:HGNC Symbol;Acc:HGNC:39]
Coordinates
chr19:62099290-62104544:+
Coord C1 exon
chr19:62099290-62099433
Coord A exon
chr19:62099434-62104442
Coord C2 exon
chr19:62104443-62104544
Length
5009 bp
Sequences
Splice sites
5' ss Seq
AGAGTAAGT
5' ss Score
9.35
3' ss Seq
TCTCCTTTTAAAATAAACAGGTC
3' ss Score
7.23
Exon sequences
Seq C1 exon
GTTCTACACGGAACTATTCACAATAAACATGAAATTAAAAGCGTTGATGTAGTAGTGACCCAAAAGGAATGTGAATTGTTCTCCAGGACCCGCGGAGACCCGTGGATGAACTGTTTCTGGAGTCTTGCTCCAGCTTTCCTGAGA
Seq A exon
GTAAGTTAACCTCTGAAAATGTGGTTTTGCAAATGAAAATATAACGTGTGACTTCAAACAGGGAATGCCAAACACTTGGATGAAAACTGTGAGATGCAGGATGTTGTTAGCAAGTCATTTTGATTTTTCAAATTATCTGAGTATTTCATATTGTATTGTAAATAACCACTTGGAGAACCGATATTTATTTAAATTTTTACCCTATGACTAAAGCATGTTTGGACAAATAGCATGTTTTGTCTAAGAGACTATTGGATAAGCTGAAAGGAATGAGACTTAATGTTGCCTCTTTACAAGGATGAGCTATATTTCTCAAACTGTAAGAATTACTTATTCTTTTTTGTTCATTTTCAATTTTGCTGCCAGAGGCTTTATATGCATTGGGGGGATACATGATTTTCTGAGTATTAGTTTTTTTTTTAACCAGAGACCTAAGGTTCTGAGTATTTAAATGATTTAAATGGCTTCATCAAGAAACCTGAAGGTTATATTTTCATCGACCTTGTTTATCATTCTAAATTTTTGCGAAATTTGTTGTGTAACATGTTTATTCTCTGAATACTGGGAATTCTGTCTGAATAGGAAATGACTGGCTTTTATAGCCAAGTTATTATTAGATCACACAGGCTCCTACTCAGAGCAATTTAAGCTAAATAGATGTTTTGTGTAACTACAGTGAATAGTATTTTTATTTCTGACCAGGACATGCCGTGGGGAAAAAAAAAATCAGCCTTAACAGTTAAAAACGCCAGTCACGACTAGATCATGTTCATCATTCTTTAAAATGTTCTCCAGCACACACATTCATCCACAGCAGGAAAGTAGAGGAGGCCCCAGTGTTAACCCTTCCAGACACCCCAGTCTACGGCACCGCTGGTTTCCTAACCAAGAATGTTTCATATCCGTGTATATTTTTTCCTTTTTGTTTTTCCTGGTGCACCGGGTCCTTATTGCCGTGCAGGCTTCTATCGAGCTGCAGCCAGGGGCTTCTCATCACCCTGCTGTCTGCTGGCGTCTGCTGGCGTCGATCACGGGCTCCAGGGCCCTCGGGCTTCAGTGTTTGCAGCTTGCAGGCTCTAGACACAGGCTCAGACCCACAGGCTCAGTGGCTCTGCACAAGCGGGATCTTCCCAGACCAGGGTGTGAACCAGCGTGCCTTGCATTGCAAAGCAGGTTCGTACGCCCGGGGCACCAGAGAAGCCCTGGAAATATTTCGGTTTGGTTTCAGTCACAGTCTGCTCTGATGCTGACGTTATAATCAGGAACTCATCCACATAGCTTCTAAATCCTTCCTTCCTTCCTGGACAGGTTCTAAACCTGAATCCATGCCCTCTTGTGTTCCCCCAACAAGGTACAGCCCAGACGGAATCCCCAGTCACCTTCTCTGTGTGTCCCGAGGCCCTCGTTCTAGACCGACCGACTTTAGGATCTCTTCCGTCTTACTCCCTGACTCCATGTTCTCAGACTCCTCTTCTGCTCCTGGGGTTAGTTTTTTTATCGCTGCTATAAACAAATGGCCACACACTTAATGGCTTAACACACAGAGAGATGTATCACTGCACAGCTCGGGAGGTAGGAAGTGGGACCTGGGTGTCACTGGACCAAAATCAAGGTGTTGGCAAGGCTGTGTTCCTTTGTGGAGGATGTAGGAGAGAATTCTGTTTTCTTATCTTTCTTGGCTTCTAGACGCATCTGTGTCCCTGGCTCACGCCCTTCTTTCTCCATCTCAGAAGCAAACAACAGACTGAGTCCTTGAAACAGCACTTTAGGGATATCCCAGCTGGCGCAGTGGTAAAGAATCTGCCTGCCAATGCAGGAGATGCAAGAGATGTGTGTTCGATCCCTGGGTGGGGAAGATCCCCTGGAGGAAGAAATGGCAATCCACTGCAGTATTCTAGCCTGGAAAATTCCATTGACAGAGGAGCCTGGTGGGCTACAGTCTATGGGTTTGCAAAGAGTCGGACACGACAGAGTGACTGAGGACACTCACCGCATCGCTTCACTCTGACCTCCTCTTCTGCCTCCCTTTTGCACGTCTAAGGACCCTTGTGGTGACGCTGGGTGTGCCCTGATGACCCAAGCTTATCTCCCTGATTTGAAGTCAGTTGGCTGCCAACCTTACGACAGGCTGCTGCCTTTACCCTCCAGTGCCCCAGGCGCATTGCTTCGTAGCGAGGTCTCCAGAACTTGGCAACCTGGGGTAAATCCCTGGCCTGTGGACCTGTGTTTGTGCCTCAGTTTCCTCATCTGTGGAATGGGGAGAATAATATCCCAAAGATTTATTGGAAGGGTTGAACTAATTTTAATAAAACACTTGGCGCTACCTGGAACATAAAAATAACATCATTAAATGTAGTTAGTATTATTTCCTTCCCAATCTCTTATATTCAAACTACTTCCACTCGCTCATTGTTTCAGCTGAATGATTGAATGATTGTTTCAAACAAAGCTCCTGGCTGTTTTGATCATTTATTTTCCTGAGTTTAAAACTCCTGTTTCATGTGCTACCTCCACTCCCACCCCTCTTCTAAGTGAATGAAAGATTCTTTAAATTCAATGGTTGTTGTTGTTCAGCCACTCAGTCATGTCTGACTCTTGTGATCCCATGGACTGCAGCACGCCAGGCCTCCCTGTCCTTCACCATCTCCCGGAGCTTGCTCAAACTCATGTCCATTGAGTCGGTGATGCCATCCAACCATCTCATCATCTGTTGTCCCCTTCTCCTCCCGCCCTCAGTTTTTCCCAGCTTCAGGGTCTTTTCCAGTGAGTTAGCTCTTTGCATCCAGAGAAGGCAATGGCACCCCACTCCAGTACTCTTGCCTGGGAAATCCCATGGACGGAGGAGCCTGGTGGGCTACAGTCCATGGGGCCGCGAAGAGTCAGACGACTGAGCGACTTCACTTTCACTTTTCACTTTCATGCATTGGAGAAGGAAATGGCAACCCACTCCAGTGTTCTTGCCTGGAGAATCCCAGGGACAGAGGAGCCTGGTGGGCTGCCGTCTACGGGGTCGCACAGAGTCGGACACGACTGACGCGCCGCCGCCGCAGCAGCAGCAGCAGCAGCTCTTTGCATCAGGTACTTTACAGTTTTCAAAAGTTTCACACACGTGAACCATACACTCCCATGACACCCTTTCCCCTACCCGCCCCCCGTGTCTCCCTCCCCTTTCTCCCCACTGGCAACCACTAGTTTGTTCTCTGTATGTGAGAGTCTGTCTTTTCTGTTTTATTCACTAGTTTGTAATACTTTTTAGATCCCACACGCATGTGACGTCACACAGCATGTGTCTCTCTCTGTCCGCCTATCTCACTTAGCATAACGCTCTCCAAGTCCATCCATGTTGTTGCAAATGGAAAAACTTCATTTTTCATAACTGAGTAATATTCCGTCCTCTTTAGCCAGTCTCTGTTGGTGGACACTGGGCTGCTTCCACACCCTGGCGACTGTAAATAATGCTGCTGTCAACACCCGGGAAGGGACAGTGAAAGTCGCCCAGTCGTGTCCGGCTCTGCGACCCCATGGACTACGCAGTGGGTGGAATTCTCCAGGCAGGAATCCTGGAGCTGGTAGCCTTTCCCTTCTCCAGGGGATCTTCCCAACCCAGGACTCCCACATTACAAGCAGATTCCTTACCAGCTGAGCCACAGCGGAAGCCCGAACATTGGGGTGCGTGCATCTTTTCAAATCGGTGTTTTTGTTATTTTCAGATATATGCCCGGAGTGGCACTGCTCAGCCATATGGTAGTGCTGTTTTTAGTTTTGCAAGAAACCTTAGCATGGCTCTCCTCATTGGCCGCAGCCATGTACGTTCCCATGCACAGTGTTCAAGGGTTCCCTTTTCTCCACACCCCCACCAACATTTGTAATTTGTGGTGTTTCTGATAACGGCATTCTGACCATGGTGAGGTGATATCTCATTGCAGTTTGGGCTTGCCTTTCCCCGATGATTACCAATATGATACTGAGCGTCTTTTCTTGGGCCTCTGCCTCTCCTCATTGGAAAAATGTCTCTTCAGCTCTTCTGCCCACTTTTAATAGGGTTGTTTGTTTTTGGGGGGGTTGAGTTGTAGGTGCTGGTTATATATGTTGGATGGCTATTGGTCACCTTTTCATTGTCCTGGATGTTCTCTACTGCACGAAGTATTACTTAATACGGACTTCCCAGGTGGCTCATTGGTAAAGAACCCGCCTGCCAATGTAGGAGACGCAGGTTCAGTCTCTGGGTCGGGAAGATCCCCTAGAGGAGGGAATGACGACTGACTCCAGTATTCCCGGCAAATCCCAAGGACAGAGGAGCCTGGCGAGGTATAGTCCATGGGGGCGCAAAGGAGTCAGATAGGACGGAGCAACTGAGCATGCATGCGTTAATTAATATAAATGATGTAGCGGTATCACTTTCAACCTTCTTTTCCAGTTTTTAAATTGGCACTGTGTTTTAAAATCTCTCCTCATGGATCAGTGGGTACTGATTTACCGCCTCTGAATCCTACCTGGTATGCTATGAACTGTATCCATTCCAACTTGATGACATTGCACCCCGATACTCTACATTATGAAGGGCATCCTGGTACAGGTCCCCGCGTGCACACGTGTGGGAATCTCCTTGGCATACACACCAGGAGCAGTACTGACAGCGGGATGTTGCTAAGCAGCAATGAGCTGGTGATGAGTCGCTGGAACGGCTGTGTGGTCTTCTCCCGCTGGCAGTAACATTCCTTTATCCCTGTTAAAGAACTGAACACTTGGCTCTATTGCATTCTCTAATTTTCTCAGTCTAATGAGGAGTCAACGTGCAGCACGCGTGCGCACACTTGTTGGGAGTCTTCTTCCGTCTCACCCTGAGCGGCGTCATCCCTCCGCGCGGTCTTCAGCTCTCCTGGCTCCCTTTGCTTCTCGAGCAACTGGGAGCAGCTGCTGTGATGCTTCTCTCTGGCTGCGTTGCTCAATGTTTTCTATGTCCAACCCTCACATTTTCTCCCTTTACTTTCTCCTTTTAAAATAAACAG
Seq C2 exon
GTCAGGATGAGCAAGAGGCACTTCAGCGTGGGCCAGCAAACGAGGGCGCTTCTTGGCAAGAATTTTCTTAAGAAATGGAGGATGAAAAGAGAGACCTTGTCG
VastDB Features
Vast-tools module Information
Secondary ID
ENSBTAG00000006896:ENSBTAT00000009067:1
Average complexity
IR
Mappability confidence:
NA
Protein Impact
5' UTR
No structure available
Features
Disorder rate (Iupred):
C1=NA A=NA C2=0.000
Domain overlap (PFAM):
C1:
NA
A:
NA
C2:
PF126982=ABC2_membrane_3=PU(1.0=12.5)
Main Inclusion Isoform:
NA
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Associated events
Conservation
Chicken
(galGal4)
No conservation detected
Chicken
(galGal3)
No conservation detected
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
No suggested primer sequences
R:
No suggested primer sequences
Band lengths:
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Pre-implantation embryo development