BtaINT0011230 @ bosTau6
Intron Retention
Gene
ENSBTAG00000006896 | ABCA9
Description
ATP-binding cassette, sub-family A (ABC1), member 9 [Source:HGNC Symbol;Acc:HGNC:39]
Coordinates
chr19:62126488-62129363:+
Coord C1 exon
chr19:62126488-62126686
Coord A exon
chr19:62126687-62129196
Coord C2 exon
chr19:62129197-62129363
Length
2510 bp
Sequences
Splice sites
5' ss Seq
CATGTGAGT
5' ss Score
7.83
3' ss Seq
TTTTCCCTTTCCTCTTGCAGATT
3' ss Score
14.41
Exon sequences
Seq C1 exon
GCCCTGCAGTTTCGGAGCAGTTACAGAGTGGCAGAACCAACGACACAGGCAGCCTTGCTGAGCCGGAACAGGTCGTGTCGTCCTTCAGTGAAGCAAGCAGCACGGTCGGCGGCCTGGCCCTCTGGAGGCAGCAGCTCTGTGCAGTAGCAAAAGTCCGCTTCCTCAAGTTAAAGAGTGAAAAGAGAGCCCTGCTGGCCAT
Seq A exon
GTGAGTACCTGCGAGTTTCAGGCTCATATGAGCAGTGTGCTGTCAACAAACTCAGGAGAGAAGAACTGCGATGCAAGAAGTTCCAGCAACTGCATGTGGTCTTTTTAACACAGAAACCAGGGTTTCTTTAACTTTTCATTTTCTATTGGAGCGTGTTGTTGTTGGGTCGCTGAGTCCAGTTCTTTTGTGACCCCACGGACAGAAGCCAGGCTCCTCTGTCCAGGGGATACAGCCAGTCAACAACACTGTGACAGTTTCAGGTGGACAGCGAAGGGACTCAGCCACGTGTACACGTGTCCACTCTCCCCCAGACTCCCCTCCCATCCAGGCTGCCAGGTAACACTGAGCAGAGGCCCCTGTGCTGTACAGCACGTCTTGTCGGTTGTCCATTTTAAACAGAGCAGTGTGTTCGTGTCCATCCCAACAACCAAGCATCCTTCCCCTCTCCTTCCCCTCTGGCAACCGTAAGCTCACATAGAAATCAGTTTTAACTGCTTTGGTGAATATGTAATTAAACCAGAGAAAGTTTGGGGTTTTCTTTTAATTTTGACAGAATCTGCTATGATCAGAGGGTTCAAGCAGTTTTTCAGAAGCTTGGAATTCAGGCCCTAGGTTCTAAGGATTTGCCTCTTTCCCCAAAGTGGCTCTGTGCCTGTTTTTATTTTAGCACAGAATTCAAGTCATTGCCTGGAACTTACCTGTAGAGTTCCAGGCCCTTTGTTAAGTAACACCTCCTTGCATGAGTCCTCTCTACCCAGGACTCATATTCATTAAAAACTATTTGTGAGTACTCCTGTACAACACTCTCTGCTAAATGTCTTATCGAATAAACCAGACATGAGATTTGGCTTTGGAGGGTGATTAGAAGTACACTGAAGGAGCGTAACGCGACAACAGCCAGGAGATGGAAGCCACCTAGCTGTCCGTCGGCAGATGAATGGGTAAAGAAGTCGTGGTCCCTAAACAATGGAATATCACTCAGTCATAGAAAGGAATGAATCTGAGTCTGTGCTAGCGAGGTGGATGAACTTAGATCCCTTATGCAGAGTGAAGTAAGTCAGAAAAACAAACACCGTATATTAATGTGTATATATATATATATGTGGAATCTAGAAGGATGGTACTGATGAATCTGTGTGCAGAGGAGAAATAGAAACACAGACATAGAGAACAGAGTTGTGGGTGCAGCAGAGGAAGGAGAGGGCGAGATGAATTGAGAGCCGCACCGACACACACCCCACAGCGTGTGACATAGAGAGCTGGTGGGAGCTGCTGCATGACCCGGGGACCTCAACCTGGTGCTCTGTGACAACCTAGGGGGGTGGGATGGGGAACGGGGAGAGGGAGGCTCAAGAGAGAGGGGACTGTGTATACTCACGGCTGATTCACGGTGTTGTACAGCAGAAACCAACACAACATTGTAACGCAATTATCCTCCAATTAAGAAAAAAAAGCGGAGTGCACAGTTAGACAATATCGTCAGCTGTAGCACTGGTACAAGAGAAATGATGTCCAAATGGGACCTCCCAAAAAAGAACCTTACATGAGGGAGAATTTGAATTTGGTGTAAGGAGATGGAGCATGTAGCTAAGGAAGGAAAGGAGGATGAAAAAGCAGGCAGAGGAAGCAGCTTGGGGATGGAGATACGTGAGGAGAGGAAGAACTGGAATTAATTTGAGTTAGCTGACATCCTGCAGCACGGGATGTACAAAAGAGTAAGAATATGTGTTGATAATACATTAAATAGAGCTAAGGAGTGTGGGCTTTATACAAAGTAAGGAACTAATGAGGTTCTTTTATTATTTTTGAATGAGTGATTGGTATAATGGACAGAATGCCAAGAAACTTAATTGCACAACCATGCAAAAAGATTTGGAAATGGTAGGCACTGGAGACAAGGAAAAGAGACCTTGAGGGCAGTTTGAAAGAGGTCAGGAAAAGGCTCATTCAGGTCCAAATTTGCAAAGTAGGAGAGAGGTTTTGGAGGCAAACAGTAATGATACGATAAGCAGAAAATTTCGGCCATTCGGAAAAGGGACATAAGGGAGAGCAATGAGTAGAAAGAGACTGGGGCTCAAGCTCGAGCAAATGAGAAAACGTCATTTACAGCAACTGGGAGCAGGAAGGGGAGGAGGTTCAGGCCGGAGGAAGCTTGGGCGTTGGTGACGTGCCAGCTGGCAGCGTTCCAGAAAAAGATGGCAAGCAGGGCTGAACAGGACGAAGAAGCGGGCACTAGAGAGAGATTTCAGAGTCGTCCTCAGCTGACTTCGTCAACTGGAAAGACGTGTTCCGAGGTGGAGGGGGAGGTGGTTTAGAGATGCACGGAGACCAGGAGTGGACGCACACGAGCCACCTCACGTCAGAAAAAAGAAAAGAGCGGGCGGAACACGGTCACCGGCTTGACTAGTGCCTGTAACTCATTTCTATTTGCGCACTGTTACCTGCTTGGACTGGAAAGCCCGCGACAGTTGCTACAGCTGAGTTGTTTTCTTTTCCCTTTCCTCTTGCAG
Seq C2 exon
ATTACTGCTTTTCGGCATCACCTTTGGCCCTCAGCTTTTGGAGCATCTGTCCTATCGGTTACAGCAAAAAAGCTATTCTTGGGGGTTGTCTCCAAACACGTACTTCCTCTCCCCGGGTCAACCACCTCAAGCCCCACTGACCCGCTTACTGGTCGTCAACAGAACAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSBTAG00000006896:ENSBTAT00000009067:19
Average complexity
IR
Mappability confidence:
NA
Protein Impact
ORF disruption upon sequence inclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.299 A=NA C2=0.023
Domain overlap (PFAM):
C1:
NO
A:
NA
C2:
NO
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
No suggested primer sequences
R:
No suggested primer sequences
Band lengths:
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Pre-implantation embryo development