GgaINT0129149 @ galGal3
Intron Retention
Description
NA
Coordinates
chr18:7928913-7929907:-
Coord C1 exon
chr18:7929715-7929907
Coord A exon
chr18:7929080-7929714
Coord C2 exon
chr18:7928913-7929079
Length
635 bp
Sequences
Splice sites
5' ss Seq
CATGTGAGT
5' ss Score
7.83
3' ss Seq
TCACCTCTCTCTCCATGCAGTTT
3' ss Score
11
Exon sequences
Seq C1 exon
ATGAGCGTGTCCCTGGGGAGTGGGCAGAAGGAGGAGCGCGGAGCCCAGAGGAGATGGAGCAGGGCTCCCTGCTGCTCTCAGACACTGGGAGGATGACACTCAGCAGCTGGGCACTCTGGAGGCAGCAGGTCTCTGCCATGGCATGGGTGCACTTCCTAAAGCTCAAGACCTCAGTGAAGAACCTCCTCTCCAT
Seq A exon
GTGAGTATAAAAGGGATGCTCTTGTGTAGAGCTGGAGCTGGGGGCAGTCACAGGAGAGGGATGATTTTCACAGCCCTGTTCTGATGAGCATTTGGAGTAATTGATATCAGGTCTTGGCTAAGAATGATCTTGGCAATCTGCACACAGAGGAGAGAAAAGCAGCTTTTCCATTGCTGGTAAATACTAAATCTGCCTCAAGTACAAATGCTTCTCCTCCCTTCCTCCCTTCCTCTTCCTTTTCTTTACTATTCTGATACTCAGTATCTTCTGTGCATTTTCATTCCTACACTAAGTAAACTACACAAAGGAAATCCATTTACTTTCTGAATGTTTAGGAACAATTTTATTTCAGACGTGGAAGGAGGTTTTAAAATGAACTAATATGTACAGTCAGAGGAAGGAAAATATTGCTTTCAGACTTCCATTTAAATTGTTATTTTTTTAATACCTCTTTAATGTTGTCAGTGTCTGGACTCATTTGACCCCATCGGTCTTCAGTCTGCCATGCTGACATTTCCAGATGGGACACAAGAAACGGAAGGAAGATGCTGAGATAGTCTCCTGTTTCCAATACATAACCACAATCTGCAAAATATCTCTTTTCAAAGTGTTTATTCACCTCTCTCTCCATGCAG
Seq C2 exon
TTTGCTGCTCTATGTGGTTTTCCTGCTCCCCCTGATTTTGCAACTGGTACTGATGACTGTCTGGCAGAGCATGGGTGCCTGGGAGCTGTGCTCGTCGCGGTACTTCCTGCCCCTGCGGACCAGGGCTCATGATGACACCACCAACCTGCTGGTGCTCAACAGCACCG
VastDB Features
Vast-tools module Information
Secondary ID
ENSGALG00000021399:ENSGALT00000006909:18
Average complexity
IR
Mappability confidence:
NA
Protein Impact
ORF disruption upon sequence inclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.138 A=NA C2=0.000
Domain overlap (PFAM):
C1:
NO
A:
NA
C2:
PF126982=ABC2_membrane_3=PU(15.4=96.5)
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
ATGAGCGTGTCCCTGGGG
R:
GCAGGTTGGTGGTGTCATCAT
Band lengths:
342-977
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]