RnoINT0010405 @ rn6
Intron Retention
Gene
ENSRNOG00000004040 | Abca8
Description
ATP binding cassette subfamily A member 8 [Source:RGD Symbol;Acc:1307069]
Coordinates
chr10:98263551-98264514:-
Coord C1 exon
chr10:98264316-98264514
Coord A exon
chr10:98263718-98264315
Coord C2 exon
chr10:98263551-98263717
Length
598 bp
Sequences
Splice sites
5' ss Seq
TGTGTGAGC
5' ss Score
2.62
3' ss Seq
AACAGCTTTATTCTTTGCAGGCT
3' ss Score
7.19
Exon sequences
Seq C1 exon
AGGTTGACATAGTGGGAGAAGGACAAACAGAGAGATCTGGGGACACAGAGAGACTCATGGAGATGGAGCAGACTCTCTCTACACTTACGGAGACGAAGAAGAAGACAGGCAGCTTGGCTCTCTGGAGACAGCAAACCTGTGCAATCGCAAAGGCTCGCTTGTTGAAGTTAAAGCATGAAAGGAAAACACTTCTCTCTGT
Seq A exon
GTGAGCATCAGGATGCTTTTGAGTTCTCTTACATAACATTAAAGACGACAAAGGTGGGGCAAGGAGAGAAAACATTCTATACATCTAAGTACCGTTGATTGCTAGGTGGGTCATTGGTCCCAGTGATTACCTATTAGGAGACTAGATGGTGGAGTTTATATTTGTCAGACAATTTGAAAGGAAAACCTGAGGTGATGTAAGTTTTCGTGCATATCTCCTTTGTTTCATGTTCTTCTCCATGGGATATCATGGACATGTTACAGGGGACCCTTTCTCCCAGGATCTGGGTGTCCGGATTGTGGGGTTGTACACCCACAAGATACATGGTATGGGATACCCCAAGGGTAGAAGAGCAAGAGAAGTGATCAAAGAGTAAAGCTACAGTTTGTCTCCTCAAACTTAGAAGTGGGAGAGATGGAAAACACTCTTACAATATAGGCAGGGCTGGAGAGACGGTCAGAAGTTAAGAGCACGGTCCTGAGTTCAATTGCCAGCAACTATATGGTGGCTCATGGCTACCTATAACGGGGACCTGATGCCCTCTAGAGTACTCGGATCAACCCTTATACGCTTGTGGTAACAGCTTTATTCTTTGCAG
Seq C2 exon
GCTCTTGGTTCTGGGAGTTGCCCTTTGCCCTCTTCTTTTCGAAAGTATCAAGATGAAAATACTTCAGAGCGCTTACACTTGGGATCTTTCCCCACACTCGTACTTCCTTGCCCCTGGACAACAGCCCCACGGCATGCTCACTCAGTTACTGATCATCAATAAGACAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSRNOG00000004040:ENSRNOT00000005489:18
Average complexity
IR
Mappability confidence:
NA
Protein Impact
ORF disruption upon sequence inclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.373 A=NA C2=0.000
Domain overlap (PFAM):
C1:
NO
A:
NA
C2:
NO
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
AGGTTGACATAGTGGGAGAAGGA
R:
GTAACTGAGTGAGCATGCCGT
Band lengths:
348-946
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]