BtaINT0011877 @ bosTau6
Intron Retention
Gene
ENSBTAG00000017704 | ABCG2
Description
Bos taurus ATP-binding cassette, sub-family G (WHITE), member 2 (ABCG2), mRNA. [Source:RefSeq mRNA;Acc:NM_001037478]
Coordinates
chr6:37993127-37994171:+
Coord C1 exon
chr6:37993127-37993186
Coord A exon
chr6:37993187-37994056
Coord C2 exon
chr6:37994057-37994171
Length
870 bp
Sequences
Splice sites
5' ss Seq
TTCGTGAGT
5' ss Score
7.9
3' ss Seq
TAACGTATGTCTTTTTATAGGTT
3' ss Score
9.07
Exon sequences
Seq C1 exon
TGGAGTCATGAAACCTGGCCTCAATGCCATTCTGGGACCCACAGGTGGAGGCAAATCTTC
Seq A exon
GTGAGTATAACAGTATAAGTAAGCTTTTTCTTTGTAGTTTTCATGTGTGGTTTTTAAAAAACTGAATTATAGTCAACATAAATATTATGTTAGTTTCATGTGTCAAATATAGAGATTTGACATTTGCATTCATCAAATGATCACCATCATAAGTCAGGCCGTCTGTCCCCGTATAAAGTTACTACAGTATTATTGACCCTATTCCTTATATTGTGTGTTACATCCCTGTGGCTTATTTATTTTATGACTGGAGGTTTGTACCTCTCAAATCTCCTTCACCTATTCCCCACCCCCAGTTTTAAGGTGCTTTTAAAGAACACTTTCGTATGAGCAGGTGTCTGTTTGTTGCACATTTTCTGCATGTCTGGTTTGGTATTGGTTGCTACGGATAAGGTGCAGTTGTGCTGGCTTGTGATTGTGTCCTGAGGAAGTCTTATTAGGTGAGCTTTACTAATAGGACACTAACAAGACTCGATAAGGTGATTGACATACAGCTGTCAGCTATGACTTGAGCTATGGAGTGGAAAAGGAAGGGGATAAAATTGAAAGTGGGGAGAGGAGCCAATGGCATAGTGAAGGCTTATATCTTAAGCAAAGGATCACATTGCCTGCCTGGAGACCCCCAAGGTCAGACAACCAAGGGGGCAGTTTGGGTGGTCTGTGCTGGATCAGGTAAGGGAGCTTTACTTTCATATTTTGGGGCATTATTATAGCATATAATTTTTAAAAAGAAGGTAAGATTTACAATATATGTATATAATTTTAGTTAAACCATGTAATTTCTTGATCTGTTAATTTGGATTCAAATTAGCTAAGAGGTAAAGCCTGATTTGGGGGGGAAAAAAAGCAATAACGTATGTCTTTTTATAG
Seq C2 exon
GTTGTTAGATATCTTAGCTGCAAGGAAGGATCCACATGGATTATCTGGAGATGTTTTGATCAATGGAGCACCTCGACCTGCCAATTTTAAATGTAACTCAGGTTATGTGGTACAA
VastDB Features
Vast-tools module Information
Secondary ID
ENSBTAG00000017704:ENSBTAT00000055044:3
Average complexity
IR
Mappability confidence:
NA
Protein Impact
ORF disruption upon sequence inclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=NA C2=0.077
Domain overlap (PFAM):
C1:
PF0000522=ABC_tran=FE(13.2=100)
A:
NA
C2:
PF0000522=ABC_tran=FE(25.2=100)
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Associated events
Conservation
Chicken
(galGal4)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
No suggested primer sequences
R:
No suggested primer sequences
Band lengths:
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]