HsaINT0001575 @ hg38
Intron Retention
Gene
ENSG00000118777 | ABCG2
Description
ATP binding cassette subfamily G member 2 (Junior blood group) [Source:HGNC Symbol;Acc:HGNC:74]
Coordinates
chr4:88131803-88132635:-
Coord C1 exon
chr4:88132576-88132635
Coord A exon
chr4:88131918-88132575
Coord C2 exon
chr4:88131803-88131917
Length
658 bp
Sequences
Splice sites
5' ss Seq
TTCGTGAGT
5' ss Score
7.9
3' ss Seq
ACATATATGTCCTCTTATAGGTT
3' ss Score
10.14
Exon sequences
Seq C1 exon
TGGGATCATGAAACCTGGTCTCAACGCCATCCTGGGACCCACAGGTGGAGGCAAATCTTC
Seq A exon
GTGAGTATAAGAGAGTATAAGTAAGCGTTTTCTGTGCACTTTTAATGTGCTTTTAAAAGCCACTTTTTTTTGTGTGCGAGCAGGTATTTATTGAGCATTTGCAACGCATGTCAGGTCTGGTTCTAGGTGCTGTGGATAACTGTAGTTGCGTGGTTTTTTCCCAAAGACCAGGTAGTCTTATTAGGTTAGCTTTACTAATAGGATTTGATAAGGTGATTGACATGTAGCAGTTGACCATGTTATCAGCTAATAGGGAGGAAAAAGAATGGGAGAATATTAAAAGTAGGGAAAGGAAGCAGAAGATGTAAGTAAAGGCATGAGTCTTAGATAAAAGAGCACATTGCCTGTGTTAGTACCTCCAAGGTCAGACAGCTGGAAGGGCCATTTGGGAGATCTGTACTTGATCAGCCAATGGTGTCTTGCTTTATGTTTTGGGGCTTTATTGTAATGTACAATGAAAAGAGAAAGGTGAGAATTTTTAAAAGCATAATTTTAGTTAAACCATAGAATTTCTTGACCAGTTAATTTTCTAACTAAAGTAGAATTTGGATTCAAAGTAGCCATGAGATATATAGCATGTGTTGGAGGGAAAAAAACCCCACAACATATATATTCTCTTATAGGTTATTAGACCCACAACATATATGTCCTCTTATAG
Seq C2 exon
GTTATTAGATGTCTTAGCTGCAAGGAAAGATCCAAGTGGATTATCTGGAGATGTTCTGATAAATGGAGCACCGCGACCTGCCAATTTCAAATGTAATTCAGGTTACGTGGTACAA
VastDB Features
Vast-tools module Information
Secondary ID
ENSG00000118777:ENST00000237612:3
Average complexity
IR
Mappability confidence:
NA
Protein Impact
ORF disruption upon sequence inclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=NA C2=0.067
Domain overlap (PFAM):
C1:
PF0000522=ABC_tran=FE(13.2=100)
A:
NA
C2:
PF0000522=ABC_tran=FE(25.2=100)
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Associated events
Other assemblies
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
No suggested primer sequences
R:
No suggested primer sequences
Band lengths:
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Autistic and control brains
- Pre-implantation embryo development