RnoINT0011108 @ rn6
Intron Retention
Gene
ENSRNOG00000007041 | Abcg2
Description
ATP binding cassette subfamily G member 2 [Source:RGD Symbol;Acc:631345]
Coordinates
chr4:88861405-88862290:+
Coord C1 exon
chr4:88861405-88861464
Coord A exon
chr4:88861465-88862175
Coord C2 exon
chr4:88862176-88862290
Length
711 bp
Sequences
Splice sites
5' ss Seq
TTCGTGAGT
5' ss Score
7.9
3' ss Seq
AACATGTGTGTTCTTTACAGGTT
3' ss Score
10.61
Exon sequences
Seq C1 exon
TGGGATCATGAAACCTGGTCTTAATGCTATTCTGGGACCCACAGGCGGAGGCAAGTCTTC
Seq A exon
GTGAGTATAACATACAAATAAATAAGCCTTTTCTCTTCATTAAGTATCACATTCACATAAGCAGAGGTTAATTCATTATTTGCAGCATATATGTCTTAGGTACTATGGATAATATGGGGTTAAATTAGCACATGGCTTTGTGCCAAGGACCAGAATGACTTACTAGGTCAACTCTAGTATATGTGGAAGTGACTGGCATATAGTGGAAGGCCATATCATACACTAGTAAGGAGGAAAAAGGATAAAGGAATGCTAAAAATGAAGACATGTGGAGAAGGTCTAATTGAAATTTCTTGTATTTGTTAAGCAACATTTTGCCTTGGTTGCGATCCCAAGGTACATAAACCAGTGTTTTCTTGATTTTATATTTTGGGTTTTGCTGTAGCACATAATGAAAAGGAAACTGAGAATTTAAACATGTAAAGGTTTTACTTTTCTTTTTCCTGTTTGATTTTGAGATAGGACCTCAGCTTTGTAGGCCTGGCTATCTTAGGACTCATTAAGTAGTCTAAGTTGGCCTTGAACTCTCACGGATGCTCCTGCCTCTGCCTTCTGAATGCTGAGAGGGAAGGTGTGCACCACTAAGCTCAACCTATAAGTTTGTTTTTACACTGTAAGCATATCAAATAGCAAAATTTGCATTTAGAACAGCTAAGCCATATGGCCTGTGTTGAAGGGAAAAATCCTTCATAACATGTGTGTTCTTTACAG
Seq C2 exon
GTTGCTAGATGTCCTAGCAGCAAGGAAAGACCCACGGGGATTATCTGGAGATGTTTTGATAAACGGGGCACCTCAACCTGCCAATTTCAAATGCAGTTCAGGTTATGTGGTTCAA
VastDB Features
Vast-tools module Information
Secondary ID
ENSRNOG00000007041:ENSRNOT00000009546:3
Average complexity
IR
Mappability confidence:
NA
Protein Impact
ORF disruption upon sequence inclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=NA C2=0.128
Domain overlap (PFAM):
C1:
PF0000522=ABC_tran=FE(13.2=100)
A:
NA
C2:
PF0000522=ABC_tran=FE(25.2=100)
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Associated events
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
No suggested primer sequences
R:
No suggested primer sequences
Band lengths:
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]