GgaINT0042860 @ galGal3
Intron Retention
Description
NA
Coordinates
chr6:18628243-18629648:+
Coord C1 exon
chr6:18628243-18628302
Coord A exon
chr6:18628303-18629533
Coord C2 exon
chr6:18629534-18629648
Length
1231 bp
Sequences
Splice sites
5' ss Seq
TTCGTGAGT
5' ss Score
7.9
3' ss Seq
TGCCTGGTGTTTGTCTGAAGTCT
3' ss Score
4.21
Exon sequences
Seq C1 exon
TGGCATTATGAAGCCAGGCTTGAATGCTATCCTGGGGCCAACAGGGAGCGGCAAATCTTC
Seq A exon
GTGAGTACTTCTTTTTGCTCTTCAAATGGCCAGTCACCTGTTCAAAGGGGATGTGGGACAGTTAAGGTTGGGAGAGGATATGAGGGACCCTCAGGCTCAGACTTTGGTGTGCCTGTGAGAAATCTGGTGATGCAGTTTGACCTCACATCCTGCCCCTCTGATGTCAGCTTTGCTGGCGTTCTTGTCCTGCATTTGTGCCACACCCTTCCTATCTGTGGTCTGTGTTACTGTCATCAGCTTTGATGGTGGCCTGAGTTGAGATACCAGGGGAACAGGAGCGACTTAAGCTCAGGTGTGGGCTCTGCTCCAGACCTGTCACGGTGTGGAGGCGGGGGCAAACTCTGTCAGGGGTGGGAGGGAGGTTGTCACCTGTGAAGCTGCTGCAGCAAGACCTCCTCAGAGATGCAGACCGCTCTGATGGCTGCCAGAAGTAGGGTATGATGTCATTCTGTAGGATACCTGCTGTAGATCATCCATCACCCAGTCTGGATGTGGCTCGGTGGTAGGAGTGCATGTGCTTGGAATCTCTGGATGAAAGCACAGAGAATACTTTGCAGGCTATTTCCAGCCAGTACTGATGCTGTTTTCTCTCTTGTGTAACCATAGTAAAAGAGTGCTGCGTCACTCTTCCTTTGAGAAGGTCAGGGACAGGTGAGTATGGCCAGGGTTCACACAGGTGTGTCTTTGTTGTGATCCTTGATCTTCCCCTCTAGGAGACTGTCAGGATGTTTCCAAGAACTAAGCTCCAACAGGGCAGTGTTCACTGAGCTAGCAGACAGTCTGGCCTCTAATTTGCAGTAAGGAGAATCCAGGCATATGTTAAAACAAAACGACTTTATGAAATTAATATTTAATCCAGTCTTGTTTATGCCCATTTGGATTAATTTCCTTGAGATCAAAGTAGTTTCTTCTGTGCTCCATTGGCTGGAGAGCAGACTGCAGCTGCTTGGCAGGGTGCTTTTGTGTGTGTGTCTGAGGTTAGCTGTTAATATGGAGCCCGAGCTAATGTCTGCAGGGGGTTGGCAGCCGTGAGGGTCTGAGTACTTCGGAATTGCTGTGGCATACCTGGCACATGAGAATCCTGCAGAAGGCCCCAGAGTAGAGGATGCCCCTTTGAGTGCCCTGTGTTTGGACTGCAGCAGCTGTAACTGCAGTGCTGACTTGTAGTACTTGCTCAGTTGAGATAGAGCAGTTGTCATGGCAAAGCCTAATGCCTGGTGTTTGTCTGAAG
Seq C2 exon
TCTGCTAGATGTGCTGGCTGCCAGAAAGGACCCAGCAGGCCTGTCTGGAGAAGTGCTCATAGATGGCATCCCACAACCTCCAAACTTCAAGTGCATCTCAGGATATGTTGTGCAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSGALG00000005792:ENSGALT00000040097:2
Average complexity
IR
Mappability confidence:
NA
Protein Impact
ORF disruption upon sequence inclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=NA C2=0.026
Domain overlap (PFAM):
C1:
PF0000522=ABC_tran=FE(13.2=100)
A:
NA
C2:
PF0000522=ABC_tran=FE(25.2=100)
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Associated events
Other assemblies
Conservation
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
No suggested primer sequences
R:
No suggested primer sequences
Band lengths:
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]