MmuINT0008816 @ mm9
Intron Retention
Gene
ENSMUSG00000029802 | Abcg2
Description
ATP-binding cassette, sub-family G (WHITE), member 2 [Source:MGI Symbol;Acc:MGI:1347061]
Coordinates
chr6:58613608-58614552:+
Coord C1 exon
chr6:58613608-58613667
Coord A exon
chr6:58613668-58614437
Coord C2 exon
chr6:58614438-58614552
Length
770 bp
Sequences
Splice sites
5' ss Seq
TTCGTGAGT
5' ss Score
7.9
3' ss Seq
AACTTGTATGTCCTTTACAGGTT
3' ss Score
9.2
Exon sequences
Seq C1 exon
TGGGATCATGAAACCTGGCCTTAATGCTATTCTGGGACCCACAGGCGGAGGCAAGTCTTC
Seq A exon
GTGAGTATAACATACAAATAAATAAGCCTTTACTGTTCATTAAGTGTTGCATTTACATAAGCAGATGTTAGCTCATTATTTGCAGTATATATGTGGTCTGGTCGTAGGTACTGTAGATAATATGGGGTTGAACTATCTCATGGTTTAGTGCCAAGGATCAGAATAACTCATTAGGTCAGCTCTAGTACATGATGAAGTGATTGGCATATAGTGGAATGCCGTATCATGTTCTAGTAATAAGGAGGAAAAAGGGTGAAGTAATGCTCACAAATGAAGGCATATAGAGAAGGTGTAACTGAAGCCTTGAGTATTTGTTCAACCACGAGGTGGCTGGGTTGTGATCTTCAAGGTTCATTAACCAAGGCGGGTATTTAAGATTTAAGCCAGTGGGTTTTTTATTTTTTTTTGTTTTTTGTTTTGTTTTGTTTTGCATTTATATTTTGGGTTTTGCTGTAGCACTTGATGAGAAAGACGATGAGAATTTAAAACATGTAAACTTGTTTCCCCATCTGTTTGATTTTAAAATAAGATCGCAGCAATGTAGCCCTGGCTAGCCTAGAACCAAGTAGTCTAAGTTGACCTTGAACTCTCATACATCCTCCTGCCTCTGCCTCCTGAGTGCTGAGAGGAAAGGTGTGTGCCACCATGTTCAACTTATAATTTTTTTTAAAACTATAAATGTATCAAGTAGTAGAATTTGCATTAAGAACAACTAAGCCATATGACCTGTGCTGAAGGAACAAAACTCGTAACTTGTATGTCCTTTACAG
Seq C2 exon
GTTGCTAGATGTCTTAGCAGCAAGGAAAGATCCAAAGGGATTATCTGGAGATGTTTTGATAAATGGAGCACCTCAACCTGCCCATTTCAAATGCTGTTCAGGTTATGTGGTTCAA
VastDB Features
Vast-tools module Information
Secondary ID
ENSMUSG00000029802-Abcg2:NM_011920:3
Average complexity
IR-S
Mappability confidence:
NA
Protein Impact
ORF disruption upon sequence inclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.019 A=NA C2=0.159
Domain overlap (PFAM):
C1:
PF0000522=ABC_tran=FE(13.2=100)
A:
NA
C2:
PF0000522=ABC_tran=PD(51.9=90.0)
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Associated events
Other assemblies
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
No suggested primer sequences
R:
No suggested primer sequences
Band lengths:
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Pre-implantation embryo development
- Muscular differentiation time course
- Spermatogenesis cell types
- Reprogramming of fibroblasts to iPSCs
- Hematopoietic precursors and cell types
Other AS DBs: