BtaINT0012126 @ bosTau6
Intron Retention
Gene
ENSBTAG00000015026 | ABL2
Description
ABL proto-oncogene 2, non-receptor tyrosine kinase [Source:HGNC Symbol;Acc:HGNC:77]
Coordinates
chr16:61911835-61915975:-
Coord C1 exon
chr16:61915805-61915975
Coord A exon
chr16:61912131-61915804
Coord C2 exon
chr16:61911835-61912130
Length
3674 bp
Sequences
Splice sites
5' ss Seq
AAGGTGAGC
5' ss Score
9.6
3' ss Seq
TGTAATGATCTCCTGGCCAGGTG
3' ss Score
7.28
Exon sequences
Seq C1 exon
AAGCCTTGCATCGCCCCTACGGTTGTGATGTTGAACCCCAGGCCCTGAACGAAGCCATCAGGTGGAGCTCCAAGGAGAACCTGCTTGGAGCCACCGAGAGTGACCCTAATCTCTTTGTTGCACTTTATGATTTTGTAGCAAGTGGTGATAACACACTCAGCATCACTAAAG
Seq A exon
GTGAGCTTCTACGTGACATCCTCTCACTTTTCAGTTTTTATTAGTGGTTAAGAAATAATGGGATCTGTTCTGGATTCTGCCTCTGACTGGAATTAGGTAGGTAATTTGGGCCCAGATACCTCTGATTCATTGGGGATAATGCCACCTTATCTACTTCATAGAGTTTTCATTAAGGCTAAAATGAGACAAAGTACATTAGAAAAAAAACACTGCACAATATATACATAAACTCGACTCCTTCTCAAAATTCTGTTCTATAGATAATATGCCAGCATCTGTCTGCCACAAAGGTAAGGTTTACCGTACACCTCTTTTCAGTGAACTGTGGCTCACTAAGAGTCGGGTTTCCAGACCCCAGTGCTACTCTTAAGTGTCGTTCGTGGGCTGACTTCCTGTGAGAACCATTCGTTACCAGTCTACACTGAGATTAAGAACTTGTACTCAAAATGTAAAACAACTACATTGCTAAGTACACTTATTATTTAGTTCAGCTGACATTTCTTTTTTTTAACAAAGCTGAAGAAAGTGGTCCAGTGATTCCCACTCTGGCACAAGCATCTTACCTTGCTGTGGACCTGCTTTGGGTAGCACTGGCCTAGACAACTTATCTCTCATTTGTGTTTGTGTGTGTTAGTGAAAGGACTAGCAGGAAGGGTTTCTATTGCAGTAACACTCACAACAGAGTAGTAGTACTGTTTTCAGTAGTAAATTCTTAACAAAGAGAACACCAAGAACATAATCATGTAAAAACCATCCATTATTGGTTTTCTGAAGAGGACAGAAAATGTGGAATTTTTATGAGAAAGAAATAGGAGTGTGGGCATTGTCATTGTATACATGAGTTGGATTGATAATCTGCTTATATTTTTCTTGTCTTTTGAATGTATTAAAGCTTCCTACTAGGAAAAAATAAGATTCTGGATAATTTTTAGCTACCTGAAAGTATAAATTAAATGATTCTTTGTCAAACAATACTTCTCTTATTTGTAAGGTTTGAAATGAGATAGTAAATGAGAGTGGATCACCAAATTAAGAAGACAGGTCTCCACTCAAGGAATGTTACCCTGAAGTAAAATATTTTTATACATCAATTCTTAAAATCCAGCCAGATTCATCAAAGGCAGAAATCCTTAAAACTGAGTTTCTGGGGTATATGTATGTCCCAGAGTGGGGATGATGGTATGTATACATGCATTTGATGGTATTTGTATGTGTGTGCAACTGTGTTTTATGATGGGAGGAAAATTTTACAGTTTTAGGATACAGGAGTTCAGAAATATTTTATACTCTGTGTGGTAGGTAGTCTCTTTGGGCTACAACACAGTCTTTTACTTTAAGGTGCTTCATTGGGAAAGTTGGTGAAGGTGACTCAGAACACTCTTTCCTAGATACAATTTTCATGTCAGTATTTTCCAAGATTGCTCAGTCACCAGCGATACATTGATAAAGAAAGCCTTTTGATTCATCAGTTACCAGTTATACATCTCAAAAAGTGGGATTTCATTTATCTTATAATCAACAGTGATTTCTTTTAAGGGCTTCCCTGGTGGCTCAGCTGATAAAGATTCTGCCTGCAGTGCAGTAAACCTGGGTTTGATCCCTGAGTTGGGAAGATCCCCTGGAGAAGGGAATGACTGACTACCTGCTCCAGTATTCTGGCCAGGAGAATTCCATGGGCTGTATAGTCCAAAACCTATGAAATGCCAGGTTTTTATCCAGGTTCTTATTTTTAATTTAATATAAAATATTGTCATGCTAAAGCTGTTTTTTTATTTTAAAAGACAAAATATATTTTTAATTAAATAACAATACTTATTTTAGTAATTTCTTTGAAGGCAATATTTTGCCTGAATTAAAAAATCAGGTTTCTCTGGCAATAAGGTCAATGTTTATTCCATTGTTAATCTTCATGGTACTCAAAAGTTCCAGAGTAGAAAATTCTCCTCCCAACTGCCAAAAAAGAGAAAAACAAATAGCCCCAAACCTAGAGTGTTCGACTATATCCTGATTATGATGACCTGTCATTATCAGTTCTTTGTAAGGAAAAATAATGTACTTGGTAAAGAACTTAGTCTTCTCAGTTTCTTAAGAGTATTAGAGAAAAGCTGCTGACTGACAAGTCTTATATAGCTTTTCTGACAGCACTAAGATTTGTTTTCCCTGCAGATATGATTGGGGAGTATTTATCAGCACGCTTGTGCATTTCCACCGCCACTATCTACACACTATCTACCTGTACACACAGGTAGTGTGTGTACAAGTAGATACAGATAGTGTGTAGATAGTACACACACTATCTACCTGTACGTGTGTATATTTTCTGTGTGTGTGTGCGTGCGCACGTGCACATACCCGAGTTTTTTCTCACTGAATGTCTCACAACCCAGGGTCTTAGTGAGATAGTAGGGGCAAATAGAAAGTCATATTGTGGCAAACATTTCTGTAGACCACTGAAAAAAGATGACTGGCAGAATAATAATTTTGAGTTTTTCCCCAGCAGTCTTTGCTTGGTAAGTACTGGGCCATGTGCTTTTGATTGCTGCGGCTTTCTTCTGTTCTCTGACACTGAGAGGTGGATGTGAACTCTACAGGAAGGCTTGCATCTCTCAGATATGGGGGTGTAAGGCCTTATAAGGATTTATATTTTTTTTATGACCTTGCCATGCAGCATGTGGGATCTTAGATCAGGGATCAAATCCATGCCTCCATGTATTGGAATCATGGAGTCTTAACCACGGAACTGCCAAGGAAGTCCCAGGAATCTTTAAATTATCATTTACTGATAATGATATCTCTTACCTTTTCTATTTTGCCTGGGCTGCAAGTACAGGATAAGGAAGCATGTTTAGGGAGTCTGAAGTTGATACTCACAACTTTATTAAAGAAATCAAGGACATTGAAATTGATAGCAAAGATACTCTGAGTAACTTGAGTCTTAGGCTCCAACTTTAGTCTCAACTTCTCTTTGCCACACACTAATTTGAGAGGAGCAGATGGGGGATTCATTCGTTATGGGGAACGGGAGGGAAATTATTTTAAAACTTCAGTCCTGGAAAAGATTGTGCTTTCGAGGTCCTGACTGCCGACCCCTACCTCCTCACTTTTCTTTCTGAAATATTGCTGATAGCTCTGTGGTCTGTGCTTTTTTGTTTTTTGTTTTTGATTGATGGTTTTTGTAGCCTTGGCCAACTGAAATTTAGAAGTAATTTTGTGTTTTACATGTCTAATCCCTAATCCTTGATTGCTGTTAGCACTGAACCATATATATGTTCTGTGACCATATATATGTTTTGAGGAAAAAATTCATTTCATTTTTTTTTTTTTTAAGAAGTGAGACCATGTCCTATTCCAGACATTTGAGTGACCTTTTATTCTTTGTGTGCTACCTTAGTTATGTATATGGAGTTTCCTGTAGTATAAAAGCTTTTGAAACCCTATTGATAATGCCAGAAAAACATGTCTAAGTATGCTTCTTTTGTTTAAGCTACAAGCTAAAAATATCAGTCAGGCTATGATGATAGCAAAGTTCATTTTCATTATCTTTAAAAAAACTGTGCTGGTTTAAAAGTTCTTGATTCATTTTTTCAGTGAATTTCAAGCTTGACAGTAGACTGTTTCTGTTTAAGATAAAGTCTTACATCTTTTCTTTCCCTCTGTAATGATCTCCTGGCCAG
Seq C2 exon
GTGAAAAGCTCCGAGTCCTTGGTTACAACCAGAATGGAGAGTGGAGCGAAGTTCGCTCTAAGAATGGCCAAGGCTGGGTGCCAAGCAACTACATCACCCCTGTGAACAGCCTGGAAAAACATTCCTGGTATCATGGACCTGTGTCTCGCAGTGCAGCAGAGTACCTACTCAGCAGTCTGATCAATGGCAGCTTCCTGGTGCGAGAGAGTGAGAGCAGCCCCGGGCAGCTGTCAATCTCGCTCAGGTACGAGGGGCGTGTGTATCACTACAGGATCAATACCACCACAGATGGCAAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSBTAG00000015026:ENSBTAT00000020006:3
Average complexity
IR
Mappability confidence:
NA
Protein Impact
ORF disruption upon sequence inclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.172 A=NA C2=0.010
Domain overlap (PFAM):
C1:
PF0001823=SH3_1=PU(38.3=31.0)
A:
NA
C2:
PF0001823=SH3_1=PD(59.6=28.3),PF0001719=SH2=PU(73.7=56.6)
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
No suggested primer sequences
R:
No suggested primer sequences
Band lengths:
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Pre-implantation embryo development