GgaINT0038964 @ galGal3
Intron Retention
Gene
ENSGALG00000004213 | ABL2
Description
NA
Coordinates
chr8:6532323-6533520:+
Coord C1 exon
chr8:6532323-6532493
Coord A exon
chr8:6532494-6533224
Coord C2 exon
chr8:6533225-6533520
Length
731 bp
Sequences
Splice sites
5' ss Seq
AAGGTGAGG
5' ss Score
9.16
3' ss Seq
TTTTTCCTCCTGGGTCGTAGGTG
3' ss Score
8.09
Exon sequences
Seq C1 exon
AGGCCCTGCACCGCCCCTATGGTTGCGATGTCGAACCCCAGGCACTGAACGAAGCCATCAGGTGGAGCTCCAAGGAGAACCTGCTGGGAGCCACCGAGAGCGATCCCAACCTCTTTGTTGCACTTTATGATTTTGTAGCAAGCGGTGACAACACGCTCAGTATCACCAAAG
Seq A exon
GTGAGGCTCTGAGTTGCAGGGCAGCCGTAGGCTGTACACGTAGCAAGAGAAAATAGGGCGCTGAAAGCTTCTGCTGTTGTTCCATTGGAAAGAGTGAGTGCGGTTAGAGATTATTCTCCAACCAAGGATTACAAGCGTATGGGCTCTCTCTCTGGTGTTGGAGAGACACCTGCTGGGCAGCGCTGGTACTGATACACCTTTGAGTAACTGGCCGAGGATCTAGCCCAAGCACACACAGGCTCCCCAGCTCCTGGCTGTGAGACATCTCTGTGAGGCAGAGGAGAACGTTGACATTATGGGTGATAACAGAATTCAGGAGCTTTCTGCTGCAGCCAAATCAAGAATTAAGAACGTCACAGAGGAATTTCTGTTTAATAAGTATATCAGAATATGCCCTTTTGCACAATTGTTAAAAAACCAAATGCCATTTAAGGCTTCAGGATGGAGACAAACCTCATTCTTCCAAGAAAAAACACTTTTCTAGTCTGAAATATGGACTGCAAGAAGCTTTGCGAGCTCATCGTTTACACTGCAATAAATTAGTCAAGTGTTCTGGCTGAAACTTTACTCATAAATACTTTACGTATACCAGTTTCATTAAGTCACTGCTGCAAGATTTTTGTTGTTTAGATACGAAACAAAGCTTAGTCAGCTGGGAGTGAATGTCTCTGTTAGTGAGACCCAGTAGATCATATTGTGCTTACTTGGCTTTTTTTCCTCCTGGGTCGTAG
Seq C2 exon
GTGAGAAGTTGCGAGTCCTGGGTTACAACCAGAATGGTGAATGGAGTGAGGTACGTTCGAAGAATGGGCAGGGCTGGGTACCAAGCAACTACATCACACCAGTCAACAGCCTGGAGAAGCACTCGTGGTATCACGGGCCGGTGTCACGCAGCGCAGCAGAGTATCTGTTGAGCAGCCTCATCAATGGCAGCTTCCTGGTTCGTGAGAGTGAGAGCAGCCCAGGGCAGCTGTCCATCTCGCTCAGGTACGAGGGACGTGTTTACCACTACAGGATCAACACCACCTCAGATGGAAAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSGALG00000004213:ENSGALT00000006699:4
Average complexity
IR
Mappability confidence:
NA
Protein Impact
ORF disruption upon sequence inclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=NA C2=0.010
Domain overlap (PFAM):
C1:
PF0001823=SH3_1=PU(38.3=31.0)
A:
NA
C2:
PF0001823=SH3_1=PD(59.6=28.3),PF0001719=SH2=PU(73.7=56.6)
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
TATGGTTGCGATGTCGAACCC
R:
GAAGCTGCCATTGATGAGGCT
Band lengths:
348-1079
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]