MmuINT0009061 @ mm10
Intron Retention
Gene
ENSMUSG00000026596 | Abl2
Description
v-abl Abelson murine leukemia viral oncogene 2 (arg, Abelson-related gene) [Source:MGI Symbol;Acc:MGI:87860]
Coordinates
chr1:156622485-156625583:+
Coord C1 exon
chr1:156622485-156622655
Coord A exon
chr1:156622656-156625287
Coord C2 exon
chr1:156625288-156625583
Length
2632 bp
Sequences
Splice sites
5' ss Seq
AAGGTGAGA
5' ss Score
8.68
3' ss Seq
TGTGATGACTTGATGGCTAGGTG
3' ss Score
4.12
Exon sequences
Seq C1 exon
AAGTTTTGCACCGCCCGTTTGGCTGTGATGCTGAATCTCAGGCACTGAATGAAGCGATCAGGTGGAGCTCCAAGGAGAACTTGCTGGGAGCCACTGAGAGTGACCCTAATCTCTTTGTTGCACTTTATGACTTTGTGGCAAGTGGTGATAACACACTCAGTATCACTAAAG
Seq A exon
GTGAGACATCTCTGAACTGTGCTTTCTAGTTTCCTAGGCTGAGACATGAAGCGCCACGTGCTGGCTTCTGCCGCTGACACTGACCAGGTGACTTGTGCTCAAGCACTTTTGGGTCATCCTTCTTTTTACCTGCTTCTGTGGCTTTGCAAAGCAGTGACTAAGAACATTACTGGTTAGATAACATTTTCTCATCGTTGTTTTCCAAGATAGTTTCTTCACCAAGAAAACGTTGGTAAAGTCTTACTAGTTAATAGTTATAACGACTTTTAGTATGTTGCTCAGGGACCAGGAGTCCCTTTATATCATAATTGACAATGGTTTCTCAAAAACCCTGAAATGCCTACTTTTTATATCAGGTTCTTATTAATAAAAAGATCTTATGCTAAAGCTTTGTTGTTGTTATTAATGAGGCAGGTGTCAGAATTAGAGGTGTATGACATCAGGCCTGCTTTTTTATATTTTTAAGAGGAAAAAAATTATCCTTTAAAAGAAAATAACACTTACTTTAGTTACTTTTCTGGAGATAGCTTACTTGAAATAAAGAAAAGTTTGGGGGCCAGAAAGATGCCTCAGTGGTTAAGAGCACTTGCTATTCTATCCCTGCAGAGGACCCTGGTTCAATTGCCTGCACCCAGTGGTGACCTGCACTATCTGATACACTCTTGTAGCCTCTTAAGGCACCACACACATACATGGTATACATACATGCATGCATATAGCCAAAACATTTGTACACATAAAAGTTTTTTCAAAAAAGTTTTGTGTTGAACATGTGGCTTTTGTCTGCAATTCCAGCATTTTGAAATACTTGAAGCAGAAACATTGTTGGCCAGAATGGGGCTAAAGTGAGTCTCTGTCCTGTACTGATAGGTTCAATGTCTGTCTCCCTGTCCATTTCCATAGCAGTCAGGAATTCCAGAGCAGAAAATTCTAACCAAAATAAGGGGAGGTGGGGTGTAGTGTCAAAATCGTATGGGTTTTGGTTCTATCCTGATTATGATGGCCTGTAGTAAGCAGTTCTGTTCAAGTGTTTAAGGAAGCAGCAGGGTAGATAAACACTTGTGCAGGCACACACACATATCTTGAGTTTCCTAGCAAGTTCTTTTGGACACATAGTTAGCTACTGTGCACCTGTACATTTGTGTAGATACACAACCATACCAGACACTCATGTCTTATAATATATATATATATATATATATATATATATATATATATATATATATATATACAGTGTATAATATGTACATGGAAGAGTTCCTACACAGACCTCTGGGTGTTTTCATAGTTAGGTATGTCAGGTGAAATGATGTAGGGCAGAGAAAGCCACGTTCTAATAAATGTTTCTGTAGGCCACAGGAGAAATGTAGTTGGCTACCACAGGAAGGCTGAATTGTTCCTCACCAGCCTTGGCCTGGCCCTCCTGTGCCCTGCACTACAGATTGCTGTGTCTTCTTTTTGCTCTCTAGCATTAATAGGTGTGAATTCTATAGAAAAGCTGTACCTCCTGGAAAGACGAGTGTCAGGTGCTGCAGAGTGGCCTTAGATGAACATTGGCTCTAGTCTGTGCTGCAGGTGTGGGGCAGAGTGTATGTCAAAGTCCACACTAGATAGTTCTACTTTTAATAAATACAACCTCAAGAAATTCAAGCTGATAGAAAGATTCACCAAGTGTTTGGAATTTTGGGTTCCAACTTAAGAGTTATTTTCTGTTTCCATAGACTAATTTTAGAGGAATGGCAAAGAGTGAGTCATTGTTATGGGAAACAGGAAGAAACTGAGAAATAGGAACTTTTAAACCTCGAGTCCTGGAAACACTTGTGCTTTAAGAGTCCTTGCCAGCCCCCACTGCTCCTCTAAACAGTTTTCTTGCTGAAAACTCTTGGTTGAGTCTAGGGTCTTGGGAGGTGTTTGCTTATATTGATGGCTTTGTTGCTTTGGTATCATCTGAAAATTTAAGTAACTTTGTATTTCACATGATGTCCTGTTCATTAACAATGAATAATTATGTATGTATGTGTGTGTGTGTGTGTGTGTGTGTGTGTATCTGTTTTAAGTGAAAGTAAAATGTGTTGTTTTTTTGAGGAGTAAGTACTGCTCAAGTGTTAGTACATGTCTGTAGTCCAGCATTCAGGAGACTGAATTAGGATCACGAGTCTGAGGCGAGCCAGTCTAGACTAAGTGAGACTCACATAAAAGGAAAAGGGTGGGCAGGTGGGCTGGGCTGAAGGCTCAGTAGTTAGCGTTTAGTGCTTTTTCAGAGGCCTGGAGTTCAGTTTTCAGTACCCATGTTGGGTACCTCACAACTGCCTGTTACTCCAGTTCCAGTGACCCCAACCCCTCTTTGGGGGACACACACAGACACTCAGTCACTGTCATTTTCTATCTATTTGAGTAAATTCTGTATTCTAATTTAATACAATTCATCGTTTCTGGAAGACTTTTTAAGTGATATGTAATCCTTCAGAAACCATTCTTTTGTTAAGCTGCTCAGAGTAGAGATCAGTCAGGATGTTAGTAAGCAAGAACCCAAGTCCTTGGTTCACTTTTCAGTGATTTGCAGTTTGACACTACACTGCTGCAGTCTGACAGTCCTAACATGCCTTTCTTTCTGTGATGACTTGATGGCTAG
Seq C2 exon
GTGAAAAGCTGCGAGTCCTTGGTTATAACCAGAATGGCGAGTGGAGTGAAGTTCGCTCCAAGAATGGACAGGGTTGGGTGCCAAGCAACTACATCACTCCAGTTAATAGCCTGGAGAAACATTCCTGGTACCACGGACCTGTATCCCGCAGCGCAGCAGAGTATCTCCTCAGCAGCCTAATCAATGGCAGCTTCCTGGTTCGAGAGAGTGAGAGCAGCCCTGGGCAGCTGTCCATCTCTCTCAGGTATGAGGGACGTGTGTATCACTACAGGATCAATACCACCACAGACAGCAAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSMUSG00000026596:ENSMUST00000166172:3
Average complexity
IR
Mappability confidence:
NA
Protein Impact
ORF disruption upon sequence inclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.108 A=NA C2=0.024
Domain overlap (PFAM):
C1:
PF0001823=SH3_1=PU(38.3=31.0)
A:
NA
C2:
PF0001823=SH3_1=PD(59.6=28.3),PF0001719=SH2=PU(73.7=56.6)
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Associated events
Other assemblies
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
No suggested primer sequences
R:
No suggested primer sequences
Band lengths:
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Pre-implantation embryo development
- Ribosome-engaged transcriptomes of neuronal types
- Neural differentiation time course
- Muscular differentiation time course
- Spermatogenesis cell types
- Reprogramming of fibroblasts to iPSCs
- Hematopoietic precursors and cell types