BtaINT0012225 @ bosTau6
Intron Retention
Gene
ENSBTAG00000008424 | ABR
Description
Bos taurus active BCR-related gene (ABR), mRNA. [Source:RefSeq mRNA;Acc:NM_001046204]
Coordinates
chr19:22379074-22379837:+
Coord C1 exon
chr19:22379074-22379126
Coord A exon
chr19:22379127-22379696
Coord C2 exon
chr19:22379697-22379837
Length
570 bp
Sequences
Splice sites
5' ss Seq
CACGTGAGT
5' ss Score
9.3
3' ss Seq
CACCACCCCATCCTTCCCAGGAC
3' ss Score
7.05
Exon sequences
Seq C1 exon
CTCTGCTCTACAAGCCCATTGACCGAGTCACCAGGAGCACCCTGGTCCTACAC
Seq A exon
GTGAGTGTCTCCCTGCCGAGTGGCCAGGGAGGGCTTAGGAGTGGGTGGGAGACTGAGCCCAGGGTGCACAAGCGCCGGAGTCACTGACAACAGCCCATGCGGGGAGTTGGGCAGAGGGTCCCTGGGCCCTGACTGCACCTGCCTGGCCTGTGGTGACCAGCTGATGGGCCCAGGGCCTAAAAATAGCTTGGCCACTAAGCTTGACTTTTGGCCAAATGCTCCCTGGGAGGCAGGCACTTCCTGCCTCCTCATTCCTTGCCTGGTCTCCAGTGTCCTTGGAGCAGCTGTAGGGTAAGTGGGGGGTGTCTCTCCCAGCTGCTTGGTGAGAGGAGACTCCACCTGGTCTGCAGCACCAGGGAGAAGAATAACGACTGCAGCAGTAATAAAGGGGCGCCACTGCCCTGCTGCTCTGACCCTAATTCTTAGCTCAGCGTTTGCAGGCATGACCGAGTCAGAGTAAGGTCCCTAGTTGGCCCCCTTGGAATTCTTTCAGTGCGGATTGAGTTCTCCCCGCTGTCTTCTCGCTCAGCCCCACCCCGCTCGCCCATCTCACCACCCCATCCTTCCCAG
Seq C2 exon
GACCTGCTGAAGCACACACCTGTGGACCACCCAGACTACCCGCTGCTACAGGATGCCCTCCGCATCTCCCAGAACTTCCTGTCCAGCATCAACGAGGACATCGACCCCCGCCGGACTGCAGTCACAACCCCCAAGGGGGAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSBTAG00000008424:ENSBTAT00000011083:7
Average complexity
IR
Mappability confidence:
NA
Protein Impact
ORF disruption upon sequence inclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=NA C2=0.191
Domain overlap (PFAM):
C1:
PF0062115=RhoGEF=FE(31.5=100)
A:
NA
C2:
PF0062115=RhoGEF=PD(16.4=66.0)
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Associated events
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
GCTCTACAAGCCCATTGACCG
R:
CTTGGGGGTTGTGACTGCAG
Band lengths:
184-754
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Pre-implantation embryo development