MmuINT0009182 @ mm9
Intron Retention
Gene
ENSMUSG00000017631 | Abr
Description
active BCR-related gene [Source:MGI Symbol;Acc:MGI:107771]
Coordinates
chr11:76277030-76277792:-
Coord C1 exon
chr11:76277740-76277792
Coord A exon
chr11:76277171-76277739
Coord C2 exon
chr11:76277030-76277170
Length
569 bp
Sequences
Splice sites
5' ss Seq
CACGTGAGT
5' ss Score
9.3
3' ss Seq
CCACCCCCATCTTTCCTCAGGAT
3' ss Score
10.39
Exon sequences
Seq C1 exon
CTCTGCTGTACAAGCCAATTGACCGAGTCACCCGGAGCACCCTGGTCCTTCAC
Seq A exon
GTGAGTGTCATGTCCCATTGTGGCTAGAGGTGGGTGGGCTAGGAGTTTTGTGTGAAGGCATTGAAATCATTGAGGCTCCATTTGGGGAACAAGGGAGAGGGTCCCCGGGTCCTGACTCTGCCAGCCTGGCCTATGGTAACCATGCCAACGGGGCCGTGTCCTAAATATAGCCTGGCTACTAAGCTTGCTACTTGGCCAAATTCTCCTCAGGAGGCATACACTTGCTGCTGCTTTGTTCCCTGCCTCATGGTCTCCAGGGTCCTGGAGCAGCTGTACAGTGGGTAGAGGAGGGTTCCCCAGCTGTTTGGTGAGGTGTGGCCTCACCTGGCCGCAGCCCCTAGGGAAAAGAGTCACCTGAGTTCAGCAGAAATCAGAGGAACACTAAATGCCTTCACCACTGCCCCTCAGACCCTTGTTCCATTGTGATTTCACAGGAATGGCTGGGTTAGAGTGTGGGTCCTGAGAGCGCCTCCTCAGAATTCTTTGGAGGATTGCATGTTCCTCGCTGTCTTCTCACTGAACCTGAACCATCTCCTCTCCACTCACTCCCCACCCCCATCTTTCCTCAG
Seq C2 exon
GATCTGTTGAAGCACACACCCGTGGACCACCCGGACTACCCGCTGCTTCAGGATGCTCTCCGCATCTCCCAGAATTTCCTGTCTAGCATTAACGAGGACATTGATCCTCGCCGGACTGCAGTCACAACCCCCAAGGGAGAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSMUSG00000017631-Abr:NM_198018:6
Average complexity
IR-S
Mappability confidence:
NA
Protein Impact
ORF disruption upon sequence inclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=NA C2=0.213
Domain overlap (PFAM):
C1:
PF0062115=RhoGEF=FE(10.8=100),PF104224=LRS4=PD(9.2=72.2)
A:
NA
C2:
PF0062115=RhoGEF=PD(16.4=66.0)
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
Associated events
Other assemblies
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
TGTACAAGCCAATTGACCGAGT
R:
CTTGGGGGTTGTGACTGCAG
Band lengths:
182-751
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Pre-implantation embryo development
- Muscular differentiation time course
- Spermatogenesis cell types
- Reprogramming of fibroblasts to iPSCs
- Hematopoietic precursors and cell types
Other AS DBs: