GgaINT0132807 @ galGal3
Intron Retention
Gene
ENSGALG00000004364 | ABR
Description
NA
Coordinates
chr19:6271871-6272250:+
Coord C1 exon
chr19:6271871-6271923
Coord A exon
chr19:6271924-6272109
Coord C2 exon
chr19:6272110-6272250
Length
186 bp
Sequences
Splice sites
5' ss Seq
CACGTGAGT
5' ss Score
9.3
3' ss Seq
TCCATGCTCACCCCATCCAGGAC
3' ss Score
7.37
Exon sequences
Seq C1 exon
CGCTGCTGTACAAACCCATTGACCGTGTCACCCGGAGCACCCTTGTTCTGCAC
Seq A exon
GTGAGTGTGATGCCACTACTGGGGTGGGATGGGGACACTGTGGTGTAATAGGGTGAGGTGAGCTGCGATGGCTGTGTCTGCTGGCTGGATCAGCCATGTCCTCCTGCTGTTGGGGTCCCACAGCCTGGGGAGCACCGTGGGGGGCACCCCAATGTGGGTTGCTCACTCCATGCTCACCCCATCCAG
Seq C2 exon
GACCTCCTCAAGCACACCCCGTCTGACCACCCCGACTACCCACTGCTGCAGGACGCCCTCCGCATCTCACAGAACTTCCTCTCCAGCATCAATGAGGACATCGATCCTCGGAGGACAGCGGTCACCACTCCCAAGGGGGAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSGALG00000004364:ENSGALT00000006958:7
Average complexity
IR
Mappability confidence:
NA
Protein Impact
ORF disruption upon sequence inclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=NA C2=0.213
Domain overlap (PFAM):
C1:
PF0062115=RhoGEF=FE(8.9=100)
A:
NA
C2:
PF0062115=RhoGEF=PD(16.1=66.0)
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Associated events
Other assemblies
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
CGCTGCTGTACAAACCCATTG
R:
TTGGGAGTGGTGACCGCTG
Band lengths:
187-373
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]