HsaINT0001908 @ hg38
Intron Retention
Gene
ENSG00000159842 | ABR
Description
active BCR-related [Source:HGNC Symbol;Acc:HGNC:81]
Coordinates
chr17:1072614-1073677:-
Coord C1 exon
chr17:1073625-1073677
Coord A exon
chr17:1072755-1073624
Coord C2 exon
chr17:1072614-1072754
Length
870 bp
Sequences
Splice sites
5' ss Seq
CACGTGAGT
5' ss Score
9.3
3' ss Seq
CACCGCCTCACCCTTCCCAGGAC
3' ss Score
8.28
Exon sequences
Seq C1 exon
CTCTGCTCTACAAGCCCATTGACCGGGTCACTCGGAGCACCCTAGTCCTACAC
Seq A exon
GTGAGTGTCAAGCCTCCGAATGGCCAGAGAGGGCTTAGGAGTTCAGTGGAAGACTGAGCCTGGGTGAGAGGGTGCTGGAGTCACCGAGAACAGTCCACCTGGGGAATCAGGGGTTCCTAGGCTCCAAGGATGCCTGTCTGGCCCGCGGTATCCATGCCGCCAGGCTAGGGCCTGAATACAGCTTGGCTACTAAGCTTGACGTGGCCAGGTGCTCCCGGGGAGGCAGGCATTCCTGCTTCCCCACCCGCTGCCTCCTGGTCTCCAGTGTCCTTGGAGCAGCTGCAGGGCAGACACAGGGTTTCTCTCCCAGCTGCTCGGGGGGATGAGCCTCCACCTGGTCTCCACACTGGGGAGAGAGTATGACTGTGGCCAGGAGAAGAGGGGGCAGCCAGGGCCCTCTCCCCTGCTGTGCTGGCTCTGATTTTTTTTTTTTTTTTTTTTTTTTGAGGCGGAGTCTCACTCTGTCACCCAGGCTGGAGTGCAGTGGTGCGATCTCGGCTCACTGCAACCTCTGCCTCCTGGGTTCAAGCAATTCTCCTGCCTCAGCCTCCCGAGTAGCTGGGACTACAGGCGCCCGCCACCACGCCCAGCTAATTTTTATATTTTTACTAGAGATGGGGTTTCACCACGTTGCCCAGGCTGGTCTCGAACTTCTGACCTCAAGAGATCCCCCGCCTCGGCCTCCCAAAGTGCTGGGATTTCAGGCATGAGCCGCCGTGCCCGGCCTGACTCTGATTTGTAGTTCAGATTTTGCGGGAATTAGGCAGGTCCCTGAGTGCCCACCCTTTGGATGGGGACTGAGCACTCCCCGGTGGCCACACATCAGGCCCCAGAGCCGCTCCCCTCAACTCACCGCCTCACCCTTCCCAG
Seq C2 exon
GACCTGCTGAAGCACACACCTGTGGACCACCCCGACTACCCGCTGCTGCAGGATGCCCTCCGCATCTCCCAGAACTTCCTGTCCAGCATCAACGAGGACATCGACCCCCGCCGGACTGCAGTGACAACGCCCAAGGGGGAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSG00000159842:ENST00000302538:7
Average complexity
IR
Mappability confidence:
NA
Protein Impact
ORF disruption upon sequence inclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=NA C2=0.212
Domain overlap (PFAM):
C1:
PF0062115=RhoGEF=FE(31.5=100)
A:
NA
C2:
PF0062115=RhoGEF=PD(16.4=66.0)
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
Associated events
Other assemblies
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
CTCTACAAGCCCATTGACCGG
R:
CTTGGGCGTTGTCACTGCAG
Band lengths:
183-1053
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Autistic and control brains
- Pre-implantation embryo development