DreINT0000255 @ danRer10
Intron Retention
Gene
ENSDARG00000059587 | ABR (1 of 2)
Description
active BCR-related [Source:HGNC Symbol;Acc:HGNC:81]
Coordinates
chr5:61857080-61859071:+
Coord C1 exon
chr5:61857080-61857132
Coord A exon
chr5:61857133-61858930
Coord C2 exon
chr5:61858931-61859071
Length
1798 bp
Sequences
Splice sites
5' ss Seq
CATGTGAGT
5' ss Score
7.83
3' ss Seq
CTGTATGTTGTCTGTTTCAGGAC
3' ss Score
12.98
Exon sequences
Seq C1 exon
CTCTCCTCTACAAACCTATTGACCGGGTTACTCGAAGCACTCTAGTCCTGCAT
Seq A exon
GTGAGTTTCTCCATTTACAATGATATACATTTACTAACCTATTATCACTAGCACATTCAGTCAGGTCTACCATTATATTTCAGCACAATGAAGCTTGTTGGCTTCCCAGTAAATCTTTACAGTATTTGTACTGAGGGTGAATCTTATTATTGTAATTAAGTTAATGTGAGTTCATATTCGGTATGAGTACTGTAGAGATATAATTGAAATCAGTCAGTAATCAGTCTGGGTTTTTTTGCTGTGAAATGTTGTCTTTACATGTTCTGAGTAATTTGTGTATGTTGACATTTTAGCCATTTGCTGATGTCGTAGTCATTCCATAAGGCTTATCAAATCTATTAAAATTTCAGTATCAATGTGTCAGACCTATTTACTGTACATTAGGTCTTTATATTTCTAGTTGTGGTTTTCACCAAGGATATTATAATCAAAACCCAAGAAAAACACAAGCTGCTGTATAATATTCGAAAAATGGATGAATGTACCTTCGATTAGGGCTGTGTAATTAATCGAAATTCACTTGCGACTTTGTTTTTGCCCTCAAATGATTATGAAAAACTATACTCGAGAAAAAAATGATTATTCAGTCAGTCAATTTAAGGACTTTTTGATTGTTCATTTGTAATTTTTGTTTTACTTTAGATGTTTTTGTTTGTTTGTGTGTTTGTTTTACTGAAAAATCTATTTGATATATCTTAAATAAAATTTAAATAAATCCATCAATCCATTAATCAATCAATCTTAAAATGCCCTGGTCTTATGGTCCACTCATAATTATTAAAAATATTTGTGATTATATATCAATCCAAAATGTGACATCTACATATTGTATACAGTACTGATGAGAAGTTTTGGGCACTAGTGTTGTGAAAAGAGTGAGTGTGTGTGTGCCTCGGAAAAAAAAGGGTATGCCATATTTATTGTCAGATCTTGTGAAACTAATTTAATAAATTACTACGTTAATTAGTTCACATTTGGCACAACTTGGTATCTTACTTTTATTTTTATTTTAAAGGCTTAAAAATGATTGATCTTAGGCTATCATATGTGCTTTATTTTTTTAACATTTAATATTTTATTTTTTTGTCCATTTGACATAACTCTACCAAAAAAATATATATACACATTACATTATATTTACATTACTTATGTACATTAATGTACATATACATTAGCTTTCTTGATTAACAGCCACTGTGGCTAGTAGTTTTCCAACATTACTAACCACTCACCGTTTTTACTAGCCACAATTTTATTGTTGGGAAAATATATTTTATGCACATAAATATGACTTTGACATGCTAAAATTACTTGCTTTAGATTTTGAATAAAAAAAATATAAAATAAAAAAAAAAATAAAAAAAAAAAATAAGGAGGCATGTGGAGATAACATTTCACTTTTTGTGTGTCGTGTATGAGCTTGCTCAATAATCATGAGCAAACGGGTCATGGTTTCATAGTTTTAATAACTAATTTCTTATAACTGATTTCTTTTAGCTCTGCCATGATGACAGTACATAATATTTTACTAGATATTTTTCAAGACGCTAGTATTCAGCTTAAAGTGACATTTAAATGCTAATTAAACTAGGCTAATTAGGTTAACTAGGCAAATTAAGAACTGCTTTTATTCTAGCTAAAGCAAAACAAATAAGACTTTCTCCAGAAGAAAAAAAATATTACAGGAAATACTGTGAAAAAAATCCTTGCCTTGTTAATCATTGTTTTGGAAATACATATAACAAAACACACAGAAGGGCTAATTATTGTGACTTCAACTGTATGTTGTCTGTTTCAG
Seq C2 exon
GACCTGTTGAAGCACACTCCTAAGGATCATCCCGATTTCCCCTTACTGCAGGACGCTCTGAGAATATCCCAGAACTTCCTGTCCAGCATCAATGAAGAGATCGACCCACGCAGGACTGCCGTGACCACACCAAAGGGAGAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSDARG00000059587:ENSDART00000082965:7
Average complexity
IR
Mappability confidence:
NA
Protein Impact
ORF disruption upon sequence inclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=NA C2=0.213
Domain overlap (PFAM):
C1:
PF0062115=RhoGEF=FE(9.0=100)
A:
NA
C2:
PF0062115=RhoGEF=PD(16.4=66.0)
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
CCTCTACAAACCTATTGACCGGG
R:
CTCTCCCTTTGGTGTGGTCAC
Band lengths:
190-1988
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]