BtaINT0013091 @ bosTau6
Intron Retention
Gene
ENSBTAG00000018986 | ACSL4
Description
acyl-CoA synthetase long-chain family member 4 [Source:HGNC Symbol;Acc:HGNC:3571]
Coordinates
chrX:62483696-62486282:-
Coord C1 exon
chrX:62486168-62486282
Coord A exon
chrX:62483854-62486167
Coord C2 exon
chrX:62483696-62483853
Length
2314 bp
Sequences
Splice sites
5' ss Seq
AAGGTAATT
5' ss Score
8.83
3' ss Seq
TTTATTATCTAAATTTTTAGTGA
3' ss Score
6.59
Exon sequences
Seq C1 exon
ACCGTAAGAAAGATCTGGTGAAGTTACAAGCAGGAGAATATGTGTCTCTCGGGAAAGTAGAAGCTGCACTGAAGAACTGTCCACTTATTGATAACATCTGTGCTTTTGCCAAAAG
Seq A exon
GTAATTTTAAAGTCGCATTTGTTTCATATACTTACAGTAACAGGATAATTGGGGAAATATTGATACAATCATAAGGGAAACATTAAACTTTCAGAGTTGGGGAATGTTATACATTTTATGAAAGTTCTTGAATTCAACAGCTTAAAGGTCATTTGAGATAACCCAGACATTTTAACCATTTATGGACCACCTACAACGTCTTGCTATGCCACAACAGTTACTTGGTTTAACATCCATAACAACTGAAACTTAGCATAAGTAATTTTCCTAGGAAGGTAACACAACTAGTGTAAGTTTTCTAAATAAAAAGCCTGAGAGACCGAACCATTTTCTTTCTTTGTATGTTAATATGATTTATTTTTCTGGACTTTATTACCCCCTTTAAAAAATTTAATTGTAAAAATCACAAAACCTAAATTTACCATCTTAACCATTCTTAAGACAGTTCACTAGGGTTAAGTATACTTACATTGTTGTACAACCAATCTCCAGAACTTCTCATCGTGCAAAAATGAAACTCAATATCCATTAAACAACTCCACATTTCCTCCTTCCCACCATCCTCCCCACCCCCTGTCCACCAACATTCTCCTTTCTGTTTCTGTGAATTTGACTACTCTAGATACCTTAAATAAATAGAATCATACAATGCTTGTCTTTTTGTGACTGGCTAGAATATTATTCAGCCTTAATAAGGAAGGAAATTCTGATACATACTACCGTATAGATGAACCCTGAGGGAAATTCTAAGTGAAATAATCCAGTTACAAAAAGATAAGCACCATATGATTCTGTTTATTCAAGGTATCTAGAGCAGTCAAATGGCAGAATCTCTTTCTTTCTCATGGCTCAGTAATATTCCATTGTACATATAGACCACATCTTTATCCGTTCATCCACTGATAGACACTTGTTTCTGTATCTTGACTATTATAGACTAATGCACGCAGTCCATTACATGGACTATGCAGCTGTGAACATGGACCAGCTGTCTCTTTGATATCCTGTTTTCATTTCCTTTGGATTTATACCAAGAAGTTAGATTACTGGATCATATGACAGTTCCATTTTTAATTTTTTGAGGAGCCTCCATACTGTTTTCTATAGTGCCTGCACCAATTTGCATTCCCATCAACAGTGCACAAGTGTTCCTTTTTCTTCACATCCTCCCCCAAACTTGTTATTTCTTGACTTTTTGATAATAGCCATTTTAACAGGTATGAAGTGATATCTTATTATGGTTTTGATTTGCATTTCCCTGGTATTGAGCACCTTTTCATGTACCTGTTGGCCATCTGTATGTCTTCTTTGGAGAAATGTCTATTCAGATCCCCATACCTATTTTAACTGAATATTTTTTGCTGTTGAGTTATATGAGTTCTTTATATATTTTGGATATTAGCCCTGTATCAGATATGATTTTCAGATACTTTTCTCCCATCTTGTCGGTGGCCTTTTCATCTCGTTGATGGCTTCCTTTGCTGTGCAGAAGCTTTTTAATTTTATATGCTCCTACCTGTTTGTTTTTATTTTGTTGCCTTTGCTTTTGGTGTCTAATTTAAAAAGTCATTACCACACCTATGTCAAAGAGCTTCCACCTTTGTTTTCCTCTAGGAGTTTTATGGTTTCAGGTCTTTGCCCATTTTTTAATAGAATTATTTTTTTTTTATTATTGAGCTGTATGAATTCTTTATACATGCTAGATATTAACCCCTTATCAGACATATCATTTGCAAATAGTTTGTCCAGTTCCATAGATTGCCTTTTTATACTCTGTTGTAACCTTTGATACACAAAAAATTTTTTCTTTTTCTTGTACTCTTCATCTATTTTTTCTTTTGTTGCCTGTGCTTTTGGTATCATATCTAAGAAAGCATTGCCAAATCCAATGTCATAAATCTTTCCCCTTGTTTTCTTCTAGGTGTTTTATTATTTTAGATCCTACATGTTTGGGTCTTTGATCTATTTTGAGTTTAATTGTCCTATGTGCTATAAGATACAGATCCAGCTTCGTTCCTTTATATGTGACTATCCAATTCTTTCAACACCATTTGTTTTAGAGACTGTCCTTTCCCCATTGAGTGGTCATGGTGCTCTTGTTGAAGATCATTTAACCATATATGCAAGGATTTATTCTGGACTGTATTCTATTCCATTGGTCTATCTATATGTCTGTGTTTATGGCAATACTATGGGCTTTATTACTTCTTAATGAACTTGTAAAAAGAGAAATATATACTTGGACTTATATGTACTATTTTCGTTGAATTTATGTTTTAAAATTTCTGTTCTGCTTTATTATCTAAATTTTTAG
Seq C2 exon
TGACCAGTCCTATGTGATAAGTTTTGTGGTTCCTAATCAGCAAAAGTTGACACTTTTGGCACAACAGAAAGGGGTAGAAGGAACTTGGGTTGATATCTGCAATAACCCTGCCATGGAAGCTGAAATACTGAAAGAGATTAGAGAAGCTGCAAATACCA
VastDB Features
Vast-tools module Information
Secondary ID
ENSBTAG00000018986:ENSBTAT00000054636:12
Average complexity
IR
Mappability confidence:
NA
Protein Impact
ORF disruption upon sequence inclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=NA C2=0.000
Domain overlap (PFAM):
C1:
PF0050123=AMP-binding=PD(10.7=23.1),PF131931=AMP-binding_C=PU(20.6=51.3)
A:
NA
C2:
PF131931=AMP-binding_C=FE(54.6=100)
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
No suggested primer sequences
R:
No suggested primer sequences
Band lengths:
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]