HsaINT0002912 @ hg38
Intron Retention
Gene
ENSG00000068366 | ACSL4
Description
acyl-CoA synthetase long-chain family member 4 [Source:HGNC Symbol;Acc:HGNC:3571]
Coordinates
chrX:109659354-109661645:-
Coord C1 exon
chrX:109661531-109661645
Coord A exon
chrX:109659512-109661530
Coord C2 exon
chrX:109659354-109659511
Length
2019 bp
Sequences
Splice sites
5' ss Seq
AAGGTAACT
5' ss Score
9.01
3' ss Seq
TTTATTTTCTGTTTTTTTAGTGA
3' ss Score
8.74
Exon sequences
Seq C1 exon
ATCGTAAGAAAGATCTAGTGAAGTTACAAGCAGGAGAGTATGTATCTCTTGGGAAAGTAGAAGCTGCACTGAAGAATTGTCCACTTATTGACAACATCTGTGCTTTTGCCAAAAG
Seq A exon
GTAACTTTCCAAAGTTGTATTTTTTGTTTCGTAAGTCAAAAGATATTTAGAAAATAATGTGATTACATATTATCATAAGGGTAACATAGTCTTCTCTTAGAATTTTCATCAGATCTGGGGAATTGTACATTTATGTAAGTTAGTGAATTCAACAGCTTAAAGATCATTTTAGATAACTCAGACGTGTTAACTATTTATTGGACACCTGCATCTTGCTAAATACTTAGCTATGCAACAAGTTATTTCATTTAACATCCATGACAACTGAGACTTAGTATAAGTAATTTTCCCAAAAATGTAACACAACTACTACATGTTGAGATGAATTTTGAACCCAAGTTTTTCTAAATCAAAAGCCTAAGAGATTGAGCCATTTTCTTTATATGTTGATATGTCTTATTTTTATGGGTTTTATTCTTTTTTAAAAATTGTAATTGTGGTAAAAAGCATATAACGTAAGATTTACCATCTTAACCATTTCTAAATGTACAGTTCAGTAGTGTTGTGTATATTTACATTGGTGTGCAGCCAATCTCCAGACCTTTTTTTCTTGCAAAATGGAAACTCTATACCCATTAAACAGCAACTCCTATTCCTCCTCCCTCCTTCCCCTGGGAACCACCATTCTACTTTCTGTTTCTATGAATTTGACTTCTCTAGAAATCTCACACAAGTAGAATTATACAGTTTTTGCCTTTTTGTGATTGGCTTAATTCCCTTAGTATAATGTCCTCAAGGATTATCCATGTTGTAGCATATGTCAGAATTTCCTTCATTTTGAAGGCTTAACAATATTCCATTGTATCCATATAATGTATTTTGTTTATATATTCATTGTCAGTGCACATTTTGGTTGCCTCCCCCTCTTGGTTGTTGTGAATAATGCTCCTAGGAAAATGCGTATGCAAATATCTCTTTGAGATCCTGCTTTCAATTATGTGGATAGATACCTAGATTTAGAATTGCTGGATCATATGACAGTTCTATTTTTAATTTTTTAAGGAACTGCAATACTGTTTTCCATAGCAACAGCACCATTTTTACATTTCCTACAACAGTACACAAACATTCTAGTTCCTCCACTTCTTCACTAGCACTTGTTTGTTTTATATAGTAGTCATCCTCATGGATGTGAGGGGATATTTTGTTTTAGTTTTGATTTGTATTTTCCTAATGATTAGTGCCACTGAGCACCTTTTCCTATGATTGTTGGCCATTCATATATTATCGCTGGAGAAATGTCTATTCAAGTTCTTTGTTCATTATTTAATTGAGCTATTTGGTTTTTTGTTACTGAGTTGTGGAAATTATATATTCTGTTTATTAACCCCTTATCAGATATATGATTTGCAAATTTTTTTTTTCTATTCCATAGATTGCCTTTTTACTCTGCTGATTGAGTCTTTTGATACACACAAGTTTTTAGTTTTGTTGTAGTCCCAGTTATCTGTTTTTTGCTTTTGTTGCCTTTGCTTTTGGTGTCACACCCAAGAAATATTGCCAAATCTATTCTCATAAAGTGTTTCTTCTGTTTTTTTTTTTCTAGCAGTTTTATAGTTTTATCAGATTGGTGCAAAAGTAATTTTGGTTTTTGCCATTAATGTCAATTACTTTTGCACCGACTTAATAGCTCTTCGATGTTTAGATTTTTGATCCATTTTGAGCTAATTTTTGTATATGTTGTAAGGTGAAGGTCCACCTTCATTCATTGCATGTGGATATCCAGTTTTCCTAGTACCATTTGTTGACGAGACTGTCCTTTCCTCATTGAGTGGTCTTAACACCCTTGTCAAAGATCGTTTCTCCATAGATACAAGGGTTTACTTCTAGTTTCTCTATTCCATTGGTCTATATGTCCTTCTTTATGCTGGTACTATGGGTTTTATCATTTCCTAATGAAACTTTAATAAATAAGAGAAATATATATTTGGAATTATCTGTACTGTACTATGTCATTGACTAGTTTATGAATAACTTTTCTCAATGTTTTCATTTCTATTTTATTTTCTGTTTTTTTAG
Seq C2 exon
TGATCAGTCCTATGTGATCAGTTTTGTGGTTCCTAACCAGAAAAGGTTGACACTTTTGGCACAACAGAAAGGGGTAGAAGGAACTTGGGTTGATATCTGCAATAATCCTGCTATGGAAGCTGAAATACTGAAAGAAATTCGAGAAGCTGCAAATGCCA
VastDB Features
Vast-tools module Information
Secondary ID
ENSG00000068366:ENST00000348502:14
Average complexity
IR
Mappability confidence:
NA
Protein Impact
ORF disruption upon sequence inclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=NA C2=0.005
Domain overlap (PFAM):
C1:
PF0050123=AMP-binding=PD(1.9=23.1),PF131931=AMP-binding_C=PU(20.6=51.3)
A:
NA
C2:
PF131931=AMP-binding_C=FE(54.6=100)
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Associated events
Other assemblies
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
No suggested primer sequences
R:
No suggested primer sequences
Band lengths:
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Autistic and control brains
- Pre-implantation embryo development