GgaINT0068021 @ galGal3
Intron Retention
Gene
ENSGALG00000008088 | ACSL4
Description
NA
Coordinates
chr4:13895793-13896767:+
Coord C1 exon
chr4:13895793-13895907
Coord A exon
chr4:13895908-13896606
Coord C2 exon
chr4:13896607-13896767
Length
699 bp
Sequences
Splice sites
5' ss Seq
AAGGTAAGA
5' ss Score
10.57
3' ss Seq
CTTCTCTTGCTATCCTGTGGTAG
3' ss Score
-2.17
Exon sequences
Seq C1 exon
ACCGTAAGAAAGACTTGGTAAAGCTACAAGCTGGGGAATACGTGTCTCTGGGCAAAGTAGAGGCAGCACTGAAGAACTGTTCGTTGATTGATAACATCTGTGCTTATGCCAAAAG
Seq A exon
GTAAGAGTAGTATTAACTTTGTGTAAACTGGAATACAAGCTGAAACTCGCTTCTATACTGATATAGTATGGTTTGCATTGAACAAAAGCTCCTACCAGAGTGTGAGTTATAAGCAGCATCTCTAAAGTAACATACATAGGCTCCAAGGTTCCCTGAAACTGGAAAAAGTAACTTATGCTTTTCTGTTGGCATTTCTTCTATTGTAGTTCAGTCTACTTTTGTCCTACCCCCGCCCTTAACAGGTATAATTTAGCACGTGCTTTGGCTTTCTATCAGAATGTGAGGGAAAATTCATCTGGACGTTCTGCACCAAAACTACATCTCAATGTTTTGGAAGTAGCCGGATAGCCCAGCTGTCTCCTCTCCCCCTGCTTATACAAACTACATGGAGGGAAACTGCAGAGAACTAGTGAAACACAAGATATAGTTGGAAAGCTAAATTATGCTGTAGTTTCACAAGTGCACTTAGAAGCATGATAGTGGTCAAACCTAACCACTTACAGCCTAGATCCTTAGCTTTGATCAGTCATAAGTTGTGAAAACCTTAAGTAAAAAAGGGATTTTGTACGCAGTATTAACTACAGTTCAAGAAGCACTGTGGATCTGTGGATGTATAATCAAGTAAGCATTTTATCCTTGAAATTGAAGCTTCAACTGTGTTTGTTGTTTTTTTCCCTTCCTTCTCTTGCTATCCTGTGG
Seq C2 exon
TAGTGACCAGTCTTATGTGATCAGTTTTGTGGTTCCCAATCAGAAGAAGCTGACGGCATTAGCTGAGCAGAAAGGTATAAGTGGAACCTGGGTTGAAATTTGTAACAATCCTACAATGGAAGCTGAAATACTACGAGAAATTAAGGAGGTGGCAAACAAGA
VastDB Features
Vast-tools module Information
Secondary ID
ENSGALG00000008088:ENSGALT00000013126:14
Average complexity
IR
Mappability confidence:
NA
Protein Impact
ORF disruption upon sequence inclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=NA C2=0.000
Domain overlap (PFAM):
C1:
PF0050123=AMP-binding=PD(1.9=23.1),PF131931=AMP-binding_C=PU(20.4=51.3)
A:
NA
C2:
PF131931=AMP-binding_C=FE(55.1=100)
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
ACCGTAAGAAAGACTTGGTAAAGCT
R:
TTGCCACCTCCTTAATTTCTCGT
Band lengths:
270-969
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]