MmuINT0010176 @ mm10
Intron Retention
Gene
ENSMUSG00000031278 | Acsl4
Description
acyl-CoA synthetase long-chain family member 4 [Source:MGI Symbol;Acc:MGI:1354713]
Coordinates
chrX:142327976-142328962:-
Coord C1 exon
chrX:142328848-142328962
Coord A exon
chrX:142328134-142328847
Coord C2 exon
chrX:142327976-142328133
Length
714 bp
Sequences
Splice sites
5' ss Seq
AAGGTAACT
5' ss Score
9.01
3' ss Seq
TTAATATGTATATTTTTCAGTGA
3' ss Score
8.01
Exon sequences
Seq C1 exon
ATCGTAAGAAAGATCTGGTAAAGTTACAAGCAGGAGAATATGTATCTCTTGGGAAAGTAGAAGCTGCACTGAAGAATTGTCCACTGATCGACAACATCTGTGCTTTTGCCAAAAG
Seq A exon
GTAACTCTTTGATCTGTCTGTCTGTCTGTCTGTCCATCCATCCATCCATCCATCCATCCATCCATCTATCTATCTATCTATCTATCTCTCTATCATCTCTTTTGTGTTTGTTGGAGGAAGCGCATATGGAACACCTTGTGCGGGCTCTCTCCTATCACCATTTGGGTCCTGGAGATCAAACTCAGGTCATCAGACTTGATTGCTATCTCGCCAGACAAAAAATAGTTCTGTTTTGTGTTTCATATACTTAACAGTAAAAGGAACATTATAAAAGAAATTTGATTGTGTGTAAACATTCAGATATCATCAAAAGTCTCTTAGAACTTTGTGGCTAGGAAAATAAACATGAAAGTTCTTGAATTTATATAACAACATGAAGGTCTTTTCCTGAAACTCATTTATTACAGTTTTTTATTAGACATCTACCATGTCTTGCTAAGTGTTTATTTTCTGATTTAACCTATGCTACAAGTTCTTTCATATAGGATCCATAGCAATTAAGACTCAGCATGAATAATTTCCCCAAAAGTTCACATAGGTAGCACATGGTGAATTTTCAGTCCAACTTTTTCTAAGTCAAAAGCCTGTGAGATTGAGCCACTTTCTTTATTTATTAACATTATATAATATGTATATTTAGAATTACTAATACTTTACTGTTACATTGAATAACGTGAATAATTTTGCTTACTCCTTAATATGTATATTTTTCAG
Seq C2 exon
TGACCAGTCCTATGTGATCAGTTTTGTGGTTCCTAACCAGAAAAAGTTGACTCTTTTGGCACAACAGAAGGGGGTAGAAGGATCTTGGGTTGATATTTGCAATAATCCCGCCATGGAAGCTGAAATACTGAAAGAAATTCGAGAAGCTGCAAATGCCA
VastDB Features
Vast-tools module Information
Secondary ID
ENSMUSG00000031278:ENSMUST00000033634:14
Average complexity
IR
Mappability confidence:
NA
Protein Impact
ORF disruption upon sequence inclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=NA C2=0.000
Domain overlap (PFAM):
C1:
PF0050123=AMP-binding=PD(1.9=23.1),PF131931=AMP-binding_C=PU(20.6=51.3)
A:
NA
C2:
PF131931=AMP-binding_C=FE(54.6=100)
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Associated events
Other assemblies
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
CGTAAGAAAGATCTGGTAAAGTTACA
R:
TGGCATTTGCAGCTTCTCGAA
Band lengths:
271-985
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Pre-implantation embryo development
- Ribosome-engaged transcriptomes of neuronal types
- Neural differentiation time course
- Muscular differentiation time course
- Spermatogenesis cell types
- Reprogramming of fibroblasts to iPSCs
- Hematopoietic precursors and cell types