GgaINT0068021 @ galGal4
Intron Retention
Gene
ENSGALG00000008088 | ACSL4
Description
acyl-CoA synthetase long-chain family member 4 [Source:HGNC Symbol;Acc:HGNC:3571]
Coordinates
chr4:13753013-13753987:+
Coord C1 exon
chr4:13753013-13753127
Coord A exon
chr4:13753128-13753829
Coord C2 exon
chr4:13753830-13753987
Length
702 bp
Sequences
Splice sites
5' ss Seq
AAGGTAAGA
5' ss Score
10.57
3' ss Seq
CTCTTGCTATCCTGTGGTAGTGA
3' ss Score
4.38
Exon sequences
Seq C1 exon
ACCGTAAGAAAGACTTGGTAAAGCTACAAGCTGGGGAATACGTGTCTCTGGGCAAAGTAGAGGCAGCACTGAAGAACTGTTCGTTGATTGATAACATCTGTGCTTATGCCAAAAG
Seq A exon
GTAAGAGTAGTATTAACTTTGTGTAAACTGGAATACAAGCTGAAACTCGCTTCTATACTGATATAGTATGGTTTGCATTGAACAAAAGCTCCTACCAGAGTGTGAGTTATAAGCAGCATCTCTAAAGTAACATACATAGGCTCCAAGGTTCCCTGAAACTGGAAAAAGTAACTTATGCTTTTCTGTTGGCATTTCTTCTATTGTAGTTCAGTCTACTTTTGTCCTACCCCCGCCCTTAACAGGTATAATTTAGCACGTGCTTTGGCTTTCTATCAGAATGTGAGGGAAAATTCATCTGGACGTTCTGCACCAAAACTACATCTCAATGTTTTGGAAGTAGCCGGATAGCCCAGCTGTCTCCTCTCCCCCTGCTTATACAAACTACATGGAGGGAAACTGCAGAGAACTAGTGAAACACAAGATATAGTTGGAAAGCTAAATTATGCTGTAGTTTCACAAGTGCACTTAGAAGCATGATAGTGGTCAAACCTAACCACTTACAGCCTAGATCCTTAGCTTTGATCAGTCATAAGTTGTGAAAACCTTAAGTAAAAAAGGGATTTTGTACGCAGTATTAACTACAGTTCAAGAAGCACTGTGGATCTGTGGATGTATAATCAAGTAAGCATTTTATCCTTGAAATTGAAGCTTCAACTGTGTTTGTTGTTTTTTTCCCTTCCTTCTCTTGCTATCCTGTGGTAG
Seq C2 exon
TGACCAGTCTTATGTGATCAGTTTTGTGGTTCCCAATCAGAAGAAGCTGACGGCATTAGCTGAGCAGAAAGGTATAAGTGGAACCTGGGTTGAAATTTGTAACAATCCTACAATGGAAGCTGAAATACTACGAGAAATTAAGGAGGTGGCAAACAAGA
VastDB Features
Vast-tools module Information
Secondary ID
ENSGALG00000008088:ENSGALT00000013126:13
Average complexity
IR
Mappability confidence:
NA
Protein Impact
ORF disruption upon sequence inclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=NA C2=0.000
Domain overlap (PFAM):
C1:
PF0050123=AMP-binding=PD(1.9=23.1),PF131931=AMP-binding_C=PU(20.6=51.3)
A:
NA
C2:
PF131931=AMP-binding_C=FE(54.6=100)
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
ACCGTAAGAAAGACTTGGTAAAGCT
R:
TCTTGTTTGCCACCTCCTTAA
Band lengths:
273-975
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]