BtaINT0013316 @ bosTau6
Intron Retention
Gene
ENSBTAG00000009696 | ACTN2
Description
Bos taurus actinin, alpha 2 (ACTN2), mRNA. [Source:RefSeq mRNA;Acc:NM_001034635]
Coordinates
chr28:9430062-9434151:+
Coord C1 exon
chr28:9430062-9430212
Coord A exon
chr28:9430213-9434042
Coord C2 exon
chr28:9434043-9434151
Length
3830 bp
Sequences
Splice sites
5' ss Seq
CAAGTATGT
5' ss Score
7.44
3' ss Seq
TTCATTTTCCCTTCTGATAGTGA
3' ss Score
6.84
Exon sequences
Seq C1 exon
GCAAAGAGCAGATCTTGCTGCAGAAGGATTACGAGTCGTCAACCCTGACGGAAGTGCGGGCTCTGCTGCGGAAGCACGAGGCCTTCGAGAGCGACCTGGCTGCACACCAGGACCGCGTGGAGCAGATTGCCGCCATCGCCCAGGAGCTCAA
Seq A exon
GTATGTGCTGCCTGCGGGCGCCGCCGCTGACATTGAGCCCTGGGTCCCACCAAGGACCCTACAGAGAGCTTCCCCAGGCATTCCCAGGGAGAGGGCCGTGGGGGCCCGCCTTTCCTGTCCTTTCCTAAATGTTGATCCAAGCCAGAGGATGCTGTGATGGGATTGGTCCTGGTTTTTTTTTTTTCTTTTTTCCTAAGCTTTTTATTTTGTATTGGGTTTTTTTCCCCCCCTCAACTGTATATTTTGTATTGGGGTATCAGGGCTTCCCTGGTGGCTCACACAGTAAAGAATCTGCCTGCAATGTAGGAGATCCCTGGGTCAGGAAGATCCCCTGGAGAAGGGAATGGCTACCCACTCAGTATTCTTGGCCTGAAGAATTCCATGGACAGAGGAGCCTGAAGGGCTATGGGTTCGCAAAGAGTCGAACACAACTGAGCGACAAGACTTTCACTTTCAGATAGCCAATTAACTGTGTTGTGGTAGTTTCAGGTGAACAGCAAAGAAACTCAGCCATACATATACATGCATCCATTTTCCCCCAGACTCCCCTCCCATCCATAGGCTGCCACATAACATTGAACCAATGTGCTATATGGCAGGTCTTTGTTGGTTATCCATTTTAAATATAGTTCGGTGTATATGTCCATCCCAAACTTTTAACTCTCCCTTTCCCCCATCCTCCCCCCACCCGGCCACCATAAGTTCATTCTTTAAATCTGTGAATCTGTTTCTGTTTGGTAAGTAAGTTCATTTATATCATTTCTTTTTAGATTCCATCTATAAGGGATGTTATAGGATATTTCTCCTTCCCTGTCTGACTTCCTTCACTCAGTTTGACAATCTCTAGATCCATACATGTTGCTGCAAATGGCATTATTTCATTCTTTTTCATGGCTGAGTCACAGTCCGGGTCCTATTTTTTTTTTCCTTAAAGAGTGACACTGACTTTTGTGCTGGTCCTTTGGTTTTGGTAGCGTCCCTTTGTCCATCCATCGGGCAGCACCCTCATGCCCAGCACAGGCAGCTCCACTTCCAATTGGTTTTGGTAGTGTCCCTGTGTCCATCCATCGGGCAGCACCCTCATGCCCAGCACAGGCAGCTCCACTTCCAAGAGGATGGGAAACGAGCACTCGGGATGGGAGCATGGCTTGCAAAGGGGGCCTCACCCAGGCCTGGGTGCATGAGATGCCCCATATTACCCCCCGCCCCTGAAACCAAAGACCAAGATGCCTCCAAAGGAAGAGATAGTAAGGCCCCACTTTCCTTTGTCATCAAATAAGTGCCGTTTCATTTTCATGCTCTTTATTTTATGGGAGGAGCTAACATGAGGTTGAGGCCAGGGTAGTTCAAGCCCCGGTGGGTGTTGTAGGTCCCACTGATCCAGACGCTGCCTCTGGCTGTGGCCATCCTTCCAGAGAGGGGCTGCTCTGTTGTTCCTAAGCCTTTTTTTTTTTAAGATCCTTGCTCCTTTTCATAAATACAGAATTCCATTCCCTACTTCTCTATCCCTCATTATTACCACTGATAGATCTGTACACTTTTTAGAGCTTGTCACATAATGATAACTTTAAACAACCAATAGTAAATGTTTTTTATGATAATGTTACATTTTAAGACTCTCATGTTTCTCCCTTTTGACTGGAGCGAATTCCTTAATTAACAGAGACGGCCTCTTTTAGAACTATCTTCTTATTCAGCCTTGCCCAAATATATTCTTAAATATTTGTGGCTTTCATATCCAGTTTTTCACTGTATTTGTGGCTTTACCATTGTCTTATTTCTTATGCTTCTTGAATGTTGGCCATCTGGCTGCTTGTTAACAATTTCAAATAAAAAAAGGGAGGGAAACACAAGTAATTTAATGTTATATCATAGTTCCCATAAATAATTTGGGATGGTTTCAAATATTGCTCATAAAAATTAAGTAACAATTTTATATTATTATTATTCCTGGTATCCCCAATGTGTATTTCTTTACTCACTCAAGAGAGGAGCCACAGAATCTAAACCTGTGTTCATCTTACTATTATTAGTCTCCCTTTCCTTTCTACCTTTTCTAAAATAATGATGTTTATGCAGTCCTCAAAGTACAGAAGAAAAGAAAATACCCTGCACAGCTATGCACTCCCTAAGTCCTTGGAATTCGGTATGTGTAGAGCTGCTGCTGCTGCTGCTGCTAAGTCGCCTCAGTCGTATCCAACTCTGCGTGACCCCATAGACGGAGGCCCACCAGGCTCCCCCTTCCCTGGGATTCTCCAGGCAAGAACACTGGAGTGGGTTGCCATTTCCTTCTCCAATGCATGAAAGTGAAAAAATAAAGTGAAGTTGCTCAGTCGTGTCCAACTCTTAGTGACCCCATGGACTGCAGCCCACCAGGCTCCTCTGTCCACGGGATTTTCCAGGCAAGAGTACTGGAGTGGGGTGCCATTGCCTTCTCCGTGTGTAGAGCTAGTATGTATGAATTAGAAAGAGGGATACATGTTCGCCCTGATGATAATCACAGAAAGCTGTGATTGATGCCTCCACTGTGGATCACTAGAAGGTTCCTGGGTTTTTAGTTCTGAAGTCTTTCTGCTCTTTAATAGTTGCATTTGAAGAGCCATATCGTTTTCACTTTGTATTCAGGGCTAAATGTATTGCTGTCATGTTTTGGTTGGTTTTGATTTTCTGGTTATAATAATCAGAGAATCTCAGTCCATCTCAGTTAGTGGTGTGTGTGTGTGTGTGTGTCTGTGTGTGTGTGTCTGTGTGAGTACGTGTGTACAAAGCTGCTCTTAAGAACTGGATTCTTTAGATGATTGGGAGCTTCTTACCCACAGAAAGCACACTCACATCACAACACATGCATCTCCTTTATTCAGAAACAGTGACATTCAATAAAGACAAGTTAATTTTGTTTAAGAGAATAAAAAGCAGGTTAACAGCCATTGCCTTAATTTAGAGTCGAAAGAAGGAATAAGCTTCAGGGAAATGGATTTGGTCCGATAGGAGGGAATTTCCTAAAAGCCTCACTTTGGACTGTTTTGAGGCTTGCTTTCATCCTAACTAAAAGGGTGATTAAATTTTGTCCAGGATTCAAACTTTCTATCCCCAGAGACACTAGGTTTACTTTCTAGTCAATAATTTGCTTGAATGGTAAATTCAGGTTATCTCACCTCACAAAGATCCCATTAGGATGTACAGCAGGGCTGGTGAGGAACAGGGACCCCTGAGGGAGAAGTCATGGTGTCCCTGCTGTCACACGAGTGACATGAGTCAGTCCTCGTCAGAGAGGAAGGGCTTGGTGCTGCTGGGCTCAGAGTCCCAGCACCTCCGCCCCCTGCCTTCCCCCCGGGACGTGGTGCTCTGTCCAGCCTGGTGCCCTTTGAGATGAGCCAAGGATACAATGGGGTGCAGGCTGATCCCCCTCTCCCTCCCTCCCCCATGACTCATTTGATGTTCCCATCACCGTGGCTTCAGCACGGTCCCTGGGACTGTCCTCAGGTCAGATTCTTGGCTTCATTTACAGGTACATCACCACTTAAAAATAATGCACTCCAGGGGTCCGGCCAAGAAAATGAAGGCAGAATAAAGTTAACCTGAGGTGTCAAGAGGACAGCTTTTCTCTCTGTTTAGAAATCTGTTGACCAGCAAGAATTTTCCTAATTCTTCCTGTGATGTCAGAGAATAGCGATCATGTTTGCAGTGCTGAACAAAACCCTGAAACACCCTGCTCGTTCTCCATTACATCTTTTTTTTTTTTTTTTAATTACTACCAATTTATTTTGAGCCTGTGTCCACTTTTCTTTATGTCATCTGGGAAAGTTATTCTTCATTTTCCCTTCTGATAG
Seq C2 exon
TGAACTGGACTATCACGACGCTGTGAATGTTAATGATCGCTGCCAGAAAATCTGTGACCAGTGGGATCGGCTGGGAACGCTCACTCAGAAGAGGAGAGAGGCCCTGGAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSBTAG00000009696:ENSBTAT00000012786:11
Average complexity
IR
Mappability confidence:
NA
Protein Impact
ORF disruption upon sequence inclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=NA C2=0.000
Domain overlap (PFAM):
C1:
PF0043516=Spectrin=FE(47.2=100)
A:
NA
C2:
PF0043516=Spectrin=FE(34.0=100)
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
No suggested primer sequences
R:
No suggested primer sequences
Band lengths:
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]