RnoINT0012609 @ rn6
Intron Retention
Gene
ENSRNOG00000017833 | Actn2
Description
actinin alpha 2 [Source:RGD Symbol;Acc:1308097]
Coordinates
chr17:66316628-66321829:-
Coord C1 exon
chr17:66321679-66321829
Coord A exon
chr17:66316737-66321678
Coord C2 exon
chr17:66316628-66316736
Length
4942 bp
Sequences
Splice sites
5' ss Seq
CAAGTGTGT
5' ss Score
3.84
3' ss Seq
TTATTTCTTGCTTTCCATAGTGA
3' ss Score
8.57
Exon sequences
Seq C1 exon
GCAAAGAACAGATCTTGCTGCAGAAGGACTATGAGTCTGCGTCCCTGACGGAAGTTCGAGCCCTACTTCGGAAGCACGAGGCCTTTGAGAGTGACCTGGCGGCACACCAGGATCGTGTGGAACAGATTGCAGCCATTGCTCAGGAGCTCAA
Seq A exon
GTGTGTGCTGGTACCCTGGCCAAAGGCCACGTTGGGTTGTGGACACCCTGCAGGGTCTCAGAGAACAGACACTCTTCCCCGCTGAGTTCCAAGGGTCAGGCTGAAGCCCCTAGGGATGATGATTTTGGTGTCTAGAGAGGTCAAAACAGGTTCAGCTTTGCTGGGTGCCAGGTTCTCTCATCCTGTACCCCTGACCCCACATAAACCATTCTGCTTCTAAGGGAATGAGATACCGGTGTGGGGGCTGAGGCCTCAGGCTGCAGCAGGAGGCAACACCCATGTCTCCTGCAAAGAGGAAGGCAAAGAGAAGTCACTACTACCTCGTTTGGGGAGGAGCAGGCTGCCTCTTTTTTTGCATTTTGTTCTGTGGGAACAGGTGTCCTGGAGCTGATCTTCGTTTAGATGTTTTCTGCCTCTGCTTTGTACCTGTGATTCCCGGGATGTGTACAGCACGTGTGGAGGGCAGAAAAGAGTTTCAGATCTCCTGGAACTGGGGTTCCTGAGGGTTCCTGGGTTCTGGGAAATGAACCCAGCTCCTCTGTAGGAGTGACCAGAGCTCCTAACTGCTGACCTAGCTTTCTGGATCCACATCTGGCAGAAATATCATTGCTTATCACCTAACAATAAAAATAAAGTAATTAAAATGTACTTCACTGTTGAGGAAGCACCAACCCCTTAATTAACAGGTAGGGCTTTGTAAAACACCGTTTCTCAGGCTGGCCCATAAAAACCCTTCATCTTTTTTCAGCCTCACGCGGTCTTATGCCTCTTGAATATTGGCTCTTTGCTAATTAACAGCCACTCACCCATAGGATGAGGGCTTGCAAAGGACTGAAATTACTTAGTGTACAGTAATGGTTCCCACGAGTGATTTGAAGCAGTCTTAAGTGTCGCCCATAAGCTTTAAGCAATTGGATATTATTATGACTGTTGTTCCAGGCAACGTTGGTGCCGTTTGCTCCACCCTGCCAAGCTGCTGTACCCATGCCTGAGATCTACGTTGTGTTCATTTGACTGTTGCTAACATTCTTTTCCTTCCTGCTCATCCTAAAAATAAGTCCAAGTTTTTAGGCAGTTCTCAGAAGTACATAAAAATAGTCCTCCAAGCCCTAACTCCCAAACGCAGGTGTACACAGAACCGTTGTGTAAGGATCAGGGAAAATGGGGCTAGGAACACTTTCAGAGGACGGCCCCAGTGTTTCCTTTGTGGGTTAGCAGAGAGTTCTAGCTTTATTCAATCACTTTGGAGATAGGGTCTCTCCGTGTAGTCCTGGCTGTCCTAGAACTCTGTGTAGACCAGGCTGGTTTCAGACTCACAGACATCCTCCTGCCTCTGTGTCCTGAATGCTGAGACTATGATTTTTTAAAAAAAAAAAATCATAGTCTGGAAATGGGAGGACATTCATATGTATACCATTGTGTGTGTGAGATCAGAGGGGGCTCTCGGGAGCTGTTCTCGCCTCCCTTTCTCCCCAGGTAGGGGTCCCGTTCCTGAGGCTGCCTGTGTGCTCCAGGGTTTTAGGTTTACCTCCTGTCTCAGCCTCCCATCATGCTCTGAGTTCTGGGATTTCAGGCACGTGCCATTTGGCTTTTTACGTGGGTTCTGGGATTGAAGTTGGGTTGTCAGGCTTATATAGCAAGCATTTTTTAACCTGGGGTGCTATCTCCCTCACTTCTTAGTTACTTTTTTCATTTATGTTGCCAGAATGCTGGACAGAAACAGCTCGAGGGGACAAGTTGATGTTTGTTCACGGTTTCATGAGGATTTCAGTCAGTCAGGACAGAGAAGACCAGGAATCAGAGAGAGCTAGGATCTTGGAGTTTCTACTGCTGGGATGAACACAACTTGGCAAGGAAACAGTTTATTTCAGCTATGTGTCCCGGATACATGTCCTGAAATAACAGGCCATCATGAAAGAGAGTCAGAGCAGAAACTAAGCAGGGGAGAAACCTGGATCCAGGAACTGAAGCAGAGGCCATGGAGGAGTGCTGCCTACTGTTCTGCTCCTCCTGGCTTGCTCAGTTTGCTTCTTTTCTTCTTCTTTTTTTTAAGGATGATCTTTTCTTTTATGTGTGAGTGTTTTGTGTGAGTGTTGTGTGTGTATGTGTGTATGTATGTGTGTGTATGTATGTATGTATGTATGTATGTATGTATGTATGTATATATGTATGTATACTACTTACATGCTTGGTAACTATGGAGAGTAGAAGATGGAGTTAGGAATGGTTGTAAACCACCATGTGGGTGCTGGGATTTGAGCTTAGGTCCTTTGTAAAAGTGACAAGTGCTCTTAATGGCTAAGCCATCTCTTCAGCCCTCAGTTTTGTTTTGTTTTTGTTTTATGTATCCCAGAATCACCACCTACAATGGACTGTGCTCTCCCATATCAATTATTAATCAAGAAATGTTGGGCAGTAGTGGTACACACCTTTAATCCCCTCACTCTAGAGGCAGAGGCAGGTGAGTCTCTGAGCTCGAGGCTAGCTTGATGTACAGAGTGAGTTCCAGGACAGCCCTCCAGGCTTGCCCACAGGCCAGCCTTATGGAGCCGTTGATTGAAATGAGGTTGTTCTCTCCTCTTAGTTGTCTCTAGGTTGTGTCAAGCTGACATAAGACTAGGCAGTGTCTTTGTTAGGCTTTCATTGCTGGGAAGAGACACCGTGACCAAGGCAACTCGTGTAAGGGTAAACATTTAATTGGGGCTTCCAGTTTCAAAGGTTTAGTGCATTTATCGTCATGGCAGAAAGCAAGGCAGAGGGCAGGTAGACTTGGTGCTGGAGGAGCCAAGGGTTCTACATCTTCATTTGCAGGTAGCAGAAGGGGATTGTCTCCTGCAGGCATCCCAGAGGAGGCTCTGTCCCACACTGGGCATAGCCTGAACACTAGGAGACCTCAGAGTCCACCTACACAGTGACTGACACACTTCCTCCAACGAGGCCACCCACACCTAGTCCAACAAGGCCACCCTCCCTAATAGTGCCACTTCTCATGGGCCAAGTATATTAAAACCACCACAGCCAACATACCCAGAGTAGAGCCCGAGTTGAGTCTGACCCCCTGAGGCCCACCCTTTGTGACTTACTTATGCCACAGTGCTCCACTTTCTTCAAATTCATGCAACTAGCCAGGGACCAAGCATTCACACACCAGGCCACAAGGGACATATCAGATGGAAACATCCAGAAATTTCTGGAAAAGACTTATCTCTTTAATGTTTCCACGTTAAAGATCTACTCTCTTGCCATTTTAAAATCAGCATAGTATAGCATCTCAGGGCAGGTACTGGGTTTGGTTTTCAGTTTGTACTCCAAGTATAAAGATCTAAATCAACTTTGGTTACATGAAAAGCCCATGTTTGTAGATAGCTGGTGGTTGCTCTTAAGGACAGGACAAGCTCTAACGAGGTGACAGGGAGCTTCTGCCCCTTTCAGAATGTTCTGGAAGAACAGCCAGATAACAATCAGATACATTTTCTCTGCTCAGCAAAAGAAACAGTAAAGTCAGCAAACGCAGGCGAGTATATGAAAAAGGAAATGGCAGAGGGGCCATGCACCCACACATTTATAAATTAATAAATTAATAAAACCGAAGTCTCAAGGACATGATTTTCAGGGGAGCAGGGCACTTCTGGAAAGTTCTCTCCTCTCAGGCTGTTTTCAAAGAAGCCTCCTGCAAATGTCTTCTGATCGCCACAGTTCCTGCTCTCCTCTTAGCCTGGTAGGGTAGCCACTTTTAAGGAGGACCCAGGCATTTACCCCTGAGATGAGGTTAAGTTTTAACCAAACTTTCTGTTTGTTTTGTTCTTTCTACCACACTAGAGGCATCCAATAGTCCAAAGAGTCATTGTCCCTAAATGGAAGAGCTCCAGCCTGCCCAGTTTTAGAAGTCTTTCTGTGCTGGCTAATGTCACAGCTCCCTCCTGGACTAGTCACTCAGTAGGCAGCAAGCTGCATGTCCTTCTAGAGAAGCCAAGGACACAGAACCCTGCCAAGTGGACACCCCCTTCCCTATGACTCATTTTAGTGTTCCAGCCACCTGGGTCAGATAGTTGGCTCTCCTTGTTGTTTCCATTTAAAAATCATGCTCTCAGGAGGCCTCAGAGGACACAGGAAGAGAAAGCTAGCCAGGGGCATTAAGAAGACAGTGCTGTTTTGAAAACCTTTAACTAACAGGATTTGTATTAACGCTTATAATTTATTCTGAGTGATAATATTTCCAGTGGGGACAATTCAAGAAACCCTGAAATGCCCTACCAGTTTTCTATTACCTTTGTATTTTGTGTATGTGTATGTGGGGGATTAGGGGTCGGGAATTCCTGAGGTGATGCAGAGGCCAGAGGTCAGAGGTCAGAAGTCGCCCTCAGATGTTTTCAGCAGGTCACCCTCCACATATTTTTTTTAAATATATAATTTTCTGATGGGCAAGAGCTTGCATGACTCAGCTATGCTGGCTGCCTAGTGAGCCCCAGGGACCTCCTTGTCTGGGTCAGGAGTAATTACATTAGCACATCTGTGGAGGTCAGAAGACAATATTAGGGATCGAATTCATGCCGTCAAATTGGTGGCAGGTTCCCTCAGTGGTTGAGCCATCTCACTAGCCTCCCTCCTGGTTTTCTATCAGGTCTTTAAAAGAGAAAGGCATGGGGCAAGTACTGGATAATGGGAGATGGCCGCCAGTTGAGGACATACATTCAATCACCCAGAACCCATGTTGAAAACCCCAACACAGATCCAGGGGAGATGACTCAGAGGCTAAGAGTGCTTCATGACCTACCCTGCTGAGGACACAGGTTCAGTTCCCAGAATCCACATCAGGCAGCTCACAACTGCCTATAACCCCAGCTCCAGGTGATCCATCGTCCTCTTCTGACCTCTACAAGTGCCCGCGCGCACACACACACACCATCTGGAAGAATTAACCTTTATTTCTTGCTTTCCATAG
Seq C2 exon
TGAACTGGACTACCACGATGCTGTGAACGTCAATGATCGTTGCCAGAAAATTTGCGACCAGTGGGATAGATTGGGGACGCTCACCCAGAAGAGGAGGGAGGCCTTGGAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSRNOG00000017833:ENSRNOT00000024098:12
Average complexity
IR
Mappability confidence:
NA
Protein Impact
ORF disruption upon sequence inclusion
No structure available
Features
Disorder rate (disopred):
C1=NA A=NA C2=NA
Domain overlap (PFAM):
C1:
PF0043516=Spectrin=FE(47.2=100)
A:
NA
C2:
PF0043516=Spectrin=FE(34.0=100)
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
No suggested primer sequences
R:
No suggested primer sequences
Band lengths:
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]