MmuINT0010429 @ mm10
Intron Retention
Gene
ENSMUSG00000052374 | Actn2
Description
actinin alpha 2 [Source:MGI Symbol;Acc:MGI:109192]
Coordinates
chr13:12282515-12288657:-
Coord C1 exon
chr13:12288507-12288657
Coord A exon
chr13:12282624-12288506
Coord C2 exon
chr13:12282515-12282623
Length
5883 bp
Sequences
Splice sites
5' ss Seq
CAAGTGTGT
5' ss Score
3.84
3' ss Seq
TTCTTTCTTGCTTTCCACAGTGA
3' ss Score
10.06
Exon sequences
Seq C1 exon
GCAAAGAACAGATCTTGCTGCAGAAGGACTACGAGTCTGCGTCCCTGACGGAAGTTCGAGCCCTACTTCGGAAGCACGAGGCCTTTGAGAGCGACCTGGCTGCACACCAGGACCGCGTGGAGCAGATCGCTGCCATTGCGCAGGAGCTCAA
Seq A exon
GTGTGTGCTGGTCCCTGGGCTGAAGACCGTGTCGGGGTGGCTATGGGTGCTGTGCAGGGTCTCTGGACCGTGTCAGGCTATGGGTGCTGTGCAGGGTCTCTAGAGAGCAGGCACTCTTCCCTGCTGAGCTCAAAGGGTCAGGCTGCTGCCCCTAGGGATGATGATTTTGGTGTCTAGAAATGTCAAAGAAGGTTCATCCTTGCTGAGTGCCAGAGTAGTCAGCTTCTCTCTCATTCTTCACACCCAACCCCACCCAAACCATTCTGCTTCCAAGAGAATGAGGTACCAGTGTGGGGGCCAAGGCCTCAGGCTGTAGCAGGAGGCAAGACCCATGGTTCCTGCAGAGAGAAAGGCCAAAAAGAAGTCACTACCTCAGGCTTGAAGGAGCAGGCTGCCTCACTTTTTTTTATGAGTTTTGTTCTGTGGGAACAGATGTCGTGGTGCTGAGGCTAATCCTCATTTAGAAGTCTTCTGTCTCTCCTTTACGCCTGTGATTCCTGGGATGTGTGGTGTGTGTGGAGGGCAGATCTCCTGGAACGGGGTTTCCTGAGGGGTGTGAGACTCTTGAGTGTTGGGAAGGGAACCCAGCTCCTCTGCAGGAGTGACCAGAGCTCTTCACTGCTGAGCCTTCTTTCTGGCTCTACATCTGCAAAAGTTGTATTGCCTATCCCTTAATAAGAAACAAGGTAATTAGAATGCACTTCAATACCTTAGTCTCCCCCCCCCCCCCCGATTCCTCACTTTTGAGGAAATGCGAGCCCCTTAATTAACAGGTAGGGCTTCTTAACACACCATTTCTCAGGCTGACCCATATAAACCCTTCATCTTTCTTGGCCTCGTGGTCTGATGCCTCTTGAATGTTGGCTCTTTGCTAATTAACAGCCACTCACCAATAAGATGAGGGCTTGAAAAGGACTCAAATTATTGAGTGTACAATGATGGTTCCCATGAGTAACTTGGTCTTAAGTGTCGCCCATATGCTTTAAGCAATTCTATATTATTACGACTGTTGTTCCAGGCATCTTTGGTGCTCTCTGCTCCACCCTGCTGAGTTGTGATGATATAACTCTGCATGAGATTCAGGTCGTACTCCTCTGACAGTTACTAACATTCTTTTCCTTCCTGCTCATCCTAAAAATAAGTCAGAGTCTCTAAACGGTTCTCAGAAGTACATAAAAATAGTTAAACAAGCCCTAACTCCACAAGCACAGGTGTGCATGGAACTGTTGTATAAGAATCAGGGGAAATGCTGGGCGTGGTGGCGCACGCCTTTGATCCTAGCACTTGGGAGGCAGAGGCAGGCGGATTTCTGAGTTCAAGGCCAGTCTGGTCTACAGAGTGAGTTCCAAGACAGCCAGGGCTATACAGAGAAACCCTGTCTCGAAAAAACAAAACAAAACCAAACCAACCAAACAAACAAAACAAAATAAAACAAAAGATTCAGTGGAAATGGAAAATGGGGGAACCCTGGGAACACTCTCACAGGGTGGCCCTGGTCTTTCTGTTGTGGTCTTAGCATAATGTTCTTGCTTTATTCAGTCACTTTGGAAACAGGGTCTCTCTGTGTAGTCCTGGCTGTCCTAGAACTCTGTGTAGACCAGGCTGGCTTCAAACTCACAGACATCCTCCTGCCTTTATGTCCTGAGTGCTGAGATACTTTTTTAAATAATAATTAAAAAAATCATAGTCTGGGAATGGAAGGACATATATGTATACCGTGTGTGTGTGTGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGATATTGGGGGGGCCTCTTGGAAGCTGTTCTTGCCTCCCTCCCTACCCAAGTGGGGTCCCGTTCCTGCTCCTGCATGTGTGTGCTGCAGGCTTCTAGGTTTACCTCCTGCCTCGACCTCCCATCGTGCTAAGAGTTCTGGGACTATAAGTGTCTGCCATTTGGCTTTTTAATGTAGGTTCTGGGGGGCCCAGCTTGGGTTGTCCGACTTGTCAGACTTACAGAGCTAGCGTGCTATCTCCCCAACTCCTTAGTTACTTTTTCATGCATATTGCCAGAATGCCTGACAGAAACAGCTTGAAGGGAAAAGTTGATTTTTGTTCACGGTTTCATAAGGATTTTAGTTGGTCAGGACAGAGAAGACCAGGAGTCAGGGAGAGCTTGGAAGTTCCTATCGCTGTGATGAACACAACCTGGGAAGGGAACAGTTCATTTCAGCGTATGTATCCCGGTCATGTGCTCTGAAATAACAGGCCATCATGAAGGACAGTCAGGGCAGAAACTCAAGCAGGGGAGAAACCTGGAGACAGGAACTGAGGCCGAGGCCACAGAGGAGTGCTGCCCACTGTTCTCCTCCTGGCTTGCTCAGTTTGTTTCCTTCCCTTTAAATTTCTTTCTTCTTATTAGTATGAGCTTTTCTTTTATGCGTGAGTGTTTGGTTTGTGTATATGTGTGTATGTGTACTGCTTACATACTTGGTAACCATGACAAGTGGAAGAGGGCACTGGATCCCCTGGAAACAGGAGTCAGGAATGGTTGTAAACAACCATGTGGGCACTGGGATTTGAACCTAGGTCCTTTGTAAGAGTGACAAGTGCTCTTAATGACTAAGCTATCTCTTCAGCCTCTAAGTGGTTGTTTTTGTTTGTTTGTTTTGTTTTGTTTTTAATGTATCCCAGAATCACTACCTACAATGGGCTGGGCCCTCCCACATCAGTTGTTAATCAAGGAAGTACAGCTGGACAATGGACATACACACTTTTCTCCCAGCACTTTAGAGGCAGAGGCAGGTGGATCTCTGCGTTTGAGGCTAGCTTGATCTATAGAGTGAGTTCCAGGACAGCCATCCATGACTATACACACACACACACACACACACACACACTACCCTGTCTCAGACAAACAACAACAAAACAAATAAGAAAGCAAGCAAGCAAATGAAAGCGTCCTCCAGGCTTGCCCACAGCCCAGTCTTCTAGAGCCATTCATTGACTGAGGTTGCTCTCTCCTCTTAGATGACTCTAGGTTGTGTCAAGTTGACATGATAACAGGCAGAGCCTTAGTTAGGGTTTCATCGCTGTGAAGAGACACACTCGTATAAAGGTAAACATTTAATTGGGGCTGCCTTACAGTTTCAAAGGTTCAGTCCATTATCATCATGGCAGGAAGTAAGGCAGAGTGCAGGCAGACATGGTGCTGAAGGAGCTGAGAGTTCTACATCTTGATTATCAGGTAGCAGAAGGGGACTGTCTCCCGCAGGCAGCCCGGAGGAGGCTCTGTTTCACACTAGGCAGAACTTGAACACTAGGAGACCTCAAAGCCCACCTACACAGTGACACACTTCCTCCAACAAGGCCACTCCCCCTAAAAATGCTACTTCCCATGGGCCAAGTATATTTGAACCACCATAGCCAACAAACCCAGAGTAGAACCAGAGTTGAGTCTGACCCTCTAAAGTCCACCCTTTGTAACTCACTTACACCACAGTGCTCCACTTTCTTCAAATCCATGCAACTAGCCAGGGACCAAGCATTCAAAACATGAGGCCACAAGGGACATATCAGATGGAAACATCCAGAAATTTCTGGGCAAGGCTTGTAGGTTACAGGTCTACTGCCTTGCCACTTTATATCAGCATAGCATAGTTGCCTAGGGGGCAGTTGCTGGATTTGTTTTTTGGTTTATACACAAAGTAGACATAAGATCCAAGCCAACTTTGGTTACGTGAAAAGCGTGTGTTTGTAGATAGCCGGTGGCTGCTCTTAAGGACTGGACGAGCTCTAACGAGGTGACAGGGAGCTTCTGTCGCTCTCAGAATGTTCTGGAAGAACACTCAGCTAACACTCAGATGTATTTGCTCTGCTCAGCAAAAGAAACAGCAAAGTCAGTAAACACAGGCGAGTGTATGAAAAAAGAAAAAGCAGAGGGTCTCTGAGCTAGAGCGTAACGGTTCCCGATGCTCCTCCTGACGGCCTGAGGTCAATCCCCAGGACCCACACGGCACAAGGAGAGGACTGACAGCCTCACACTTGTAAGTTGTCCTCTGACCTCTGTGCACTTAGTGCGGCACACACACACACACACGCGCACATTTATAAATAAATAAATAAATAAATAAATAAATAAATAAATAAATAAAACTGAAGCCCCAAGGAAGTGGTTTTCAGGGGAGCAGGGCACTTCTGGAAAGTTCTCTAATCTCAGGCTGTTTTCAGAGAAGCCTGGTACACATGTCTTCTGATCTCCACAGTTCCTGCTCTCCTCTAAAACCTGGCAGGGTGGTTACTTTTTAAGCAGGACTCAGACATTTACCCCCGAGATGAGGTTAAGTTTTACTCAAGCTTTTTGTTTTGTGTTGTTCTTTCTTTCTACCACACTGGTGGCATCCAACAGTCCAAAGAGTCGTTGTCCATAAATGGAAGAGCTCCAGCCTGCCCAGTTTTAGAAGCCTTTCTGTGCTGGGTGATGTCACAGCCTTCTCCTGGATGGGTCACTCAGAAGGCAGCAAGCTGCATGCCCTTCTAGAGGCGCCAAGGACACAGAACCCTGCAAGTGGACACCTCCTTCCCTGTGACTCATTTTAATGTTCCAGCCACCTGGGTCAGATAGTTGGCTCCCCTTGTTGTTTCCATTTAAAAGTCATGCTCTCAGGAGGCCTCAGAGGACACAGGAAGAGAAAGTGAGCCAGAGGCATTAAGAAGACAGTGCCATTTTGAAAACTGTTGACTTAACAGGATTTGTATTAATTCTTATAATTTGTTCCAAGCGATACTATTTTCACTGGGGACAATTCAGGAAACCCTGAAATGCCCTACCAGTTTTCAGTGGCCTTCGTATTTTGTGTATGTGTATGTGGGGGGGGTAGGGGTCGGGAATCCCTGAAGTGATGTGGAGGCCAGAGGTTAGAGGCCAGTCTCAAGTGTCTTCAGCAGGTCACTCTCTGCATTTTTAAAAAATGATATAGAATTTCCTAATGGGCAAGAGCTTGAATGATTCAGCTCTGCTGGCTGCCTGCTGGGCCCCAGGGATCCCCTTGTCTGGGTCAAGGAGTAATTAAATTAGCACATCTGTGGCAGTCAGAAGACAATATTAATATTAGGGATTAAATTCACCTGTCAAGCTTGGTGGCAGGTTATCTTAGTGGTTGCTCTCACTAGCCTCCCTCTGGGTTTTCTACTGGATCTTTAAAAAAAAAAAAAAAAAGGCATGGGGATGGGGACTGGATAATAGGAGATGGCTGCCACTTGAGGACATAAGTTCAATCCCCCAGAACCCATGTTTAAAACCCCGGTACAGATGCTGGGGAGCTGACGCAGTGGCTAAGAGTGCTTCATGACCTACCTTGCTGAGGACACGGGTTTTCAGTTTTCAGAATCCATGTTAGGCGGCTTACAACTGTCTATAACCCCTGCTCCAGGGATCCGTCATCCTCTTCTGACCTCTACAGGCACGCGTGCACACGCACACACTAAAATATATATTAATGAGCATGATGGTATGTTCTTTTCATTTCAGCTCCGGGGAGACAGGTACAGGTAGATGCTTAGCGCTCGATAGGAGACAGCTTAGCTGAATAATGCAAAGCCCTGGCTACTAGAAGACTCTATCTCAAAAAAAAAAAAAAAAAAAAAAAGTTGGGAGTTTAATGGAGTTTAATGACTGACAGAAATACCCAGGGTTTACCTATGGTCTCCAAGTGCACGTGCACATATATGAGTGTACATTTGTTCACACATACATTTGTATACACGTGTGTGTGTGTGTGTGTGTGTGTGTACACACGCATGCGTACACAGACACACACACACATCTCTTCCCTGTTTATTTCCAGCTTGTGTCCATTTCCCTCACACCATTTGGGAGGATTCATCTTTCTTTCTTGCTTTCCACAG
Seq C2 exon
TGAACTGGACTATCACGATGCTGTGAACGTCAATGATCGGTGCCAGAAAATTTGCGACCAGTGGGATAGATTGGGGACGCTCACCCAGAAGAGGAGGGAGGCCTTGGAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSMUSG00000052374:ENSMUST00000064204:12
Average complexity
IR
Mappability confidence:
NA
Protein Impact
ORF disruption upon sequence inclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=NA C2=0.000
Domain overlap (PFAM):
C1:
PF0043516=Spectrin=FE(47.2=100)
A:
NA
C2:
PF0043516=Spectrin=FE(34.0=100)
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Associated events
Other assemblies
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
No suggested primer sequences
R:
No suggested primer sequences
Band lengths:
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Pre-implantation embryo development
- Ribosome-engaged transcriptomes of neuronal types
- Neural differentiation time course
- Muscular differentiation time course
- Spermatogenesis cell types
- Reprogramming of fibroblasts to iPSCs
- Hematopoietic precursors and cell types