BtaINT0013344 @ bosTau6
Intron Retention
Gene
ENSBTAG00000022244 | ACTN3
Description
actinin, alpha 3 (gene/pseudogene) [Source:HGNC Symbol;Acc:HGNC:165]
Coordinates
chr29:45241334-45242037:+
Coord C1 exon
chr29:45241334-45241399
Coord A exon
chr29:45241400-45241878
Coord C2 exon
chr29:45241879-45242037
Length
479 bp
Sequences
Splice sites
5' ss Seq
CTGGTAAGT
5' ss Score
10.65
3' ss Seq
CCCGGCCTTTAACCCTGCAGGGG
3' ss Score
9
Exon sequences
Seq C1 exon
AAGCGGAATGGCATGATGGAGCCTGATGACTTCCGGGCCTGCCTCATCTCCATGGGCTATGACCTG
Seq A exon
GTAAGTGTCCTCCAGCCCTGTCCAGGGGTTCCCTCCGTGGCCCTTCCTACATATTGATCACCCACTGTGTCCCTCCCACCTTCACATCTTCATTTCCTCCTCATCCACCTCCTGGGGCTGGGGAGAATTATCCCATTTCCTAGGGGGGCACCTAACAAAAGTTCAAAGAGGTGAATTAATTTGGAGCTGGTTCTGTGTGACTCCAGAGCCTGAGCTTGCAACATGTCCACCTCAGAGAGAGAGCACTACAGGGGTGTGGGCAAGAGGTCAGGACCAGCAGGAGCAGGGCATCGCCATGGGCAGGAAGCAGAGTTCAGCCCAGTGGAAAGGACTTCCCAGAGCCAGAGCTAGGGCTGCAGTGGACCGTCCACGGAAAAGGGGGGCCGCCTCGTCACAGGGGTCGTCAAGCCAGGGGGACACCAGGAACCCTCCTGGCTTAAGCACCGCCCGGGCACGGTGCCCGGCCTTTAACCCTGCAG
Seq C2 exon
GGGGAGGTGGAGTTCGCTCGCATCATGACCATGGTGGACCCCAACGCAGCTGGGGTTGTGACCTTCCAAGCCTTCATCGACTTTATGACCCGAGAGACAGCCGAGACAGACACGGCTGAGCAGGTTGTGGCCTCGTTCAAGATCCTGGCGGGAGACAAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSBTAG00000022244:ENSBTAT00000030030:20
Average complexity
IR
Mappability confidence:
NA
Protein Impact
ORF disruption upon sequence inclusion
No structure available
Features
Disorder rate (disopred):
C1=0.000 A=NA C2=0.000
Domain overlap (PFAM):
C1:
PF134991=EF-hand_7=FE(26.6=100)
A:
NA
C2:
PF134991=EF-hand_7=PD(35.4=52.8),PF087265=EFhand_Ca_insen=PU(26.9=34.0)
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
AAGCGGAATGGCATGATGGAG
R:
GTCTCCCGCCAGGATCTTGAA
Band lengths:
222-701
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]