RnoINT0012636 @ rn6
Intron Retention
Gene
ENSRNOG00000019745 | Actn3
Description
actinin alpha 3 [Source:RGD Symbol;Acc:621792]
Coordinates
chr1:220120899-220121674:-
Coord C1 exon
chr1:220121609-220121674
Coord A exon
chr1:220121058-220121608
Coord C2 exon
chr1:220120899-220121057
Length
551 bp
Sequences
Splice sites
5' ss Seq
CTGGTGAGT
5' ss Score
10.1
3' ss Seq
CCTGACCTCTATCTTTGCAGGGA
3' ss Score
10.09
Exon sequences
Seq C1 exon
AAGCGGAATGGGATGATGGAACCTGATGATTTCCGAGCTTGCCTCATCTCCATGGGCTATGATCTG
Seq A exon
GTGAGTCCGGTGACCACGTCAAAAGTATCATCAGGGGGTGGGGATTTAGCTCAGTGGTAGAGCACTTACCTAGGAAGCGCAAGGCCCTGGGTTCAGTCCCCAGCTCCGAAAAAAAGAACCAAAAAAAAAAAAAAAGTATCATCAGATCCCTTCCTTCTGCCCAGCCCCCTCTAAATACAAACTATCTTCTCTGCTTATCACACCCATAAAAAAAGGCTATCAAAGACACTGAGAGGTAAATTAACTTGTCCTATGTGACTTCAAGGTCTTCACTTGGACCATTTTTCCCCTCTAAGAAACAATGCTAAGTTATAAAGTATCAGAACCAGGAAGCAAGAGGAGGGATTGCTACAGGCAGACTGCATACTTCTGTCTGCCTAGCATGAAGGACTCCCTAAAGTCAAGCTGACTGATGTCTTGGGTAGAAGAGGGTAACTTGTCACCCAGGCGATGTAAGTCAAGTACAAAAAAATCTCCAGGAAGGGACATGAGGAGCAAGACCTCTTGCCTTTAGCACGTATGGACACAGTGCCTGACCTCTATCTTTGCAG
Seq C2 exon
GGAGAGGTGGAGTTTGCTCGGATCATGACCATGGTGGACCCCAATGCAGCTGGGGTCGTGACCTTCCAAGCCTTCATTGACTTCATGACCCGAGAGACTGCAGAGACAGACACAGCTGAACAAGTTGTAGCCTCCTTCAAAATCCTAGCAGGAGACAAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSRNOG00000019745:ENSRNOT00000026812:19
Average complexity
IR
Mappability confidence:
NA
Protein Impact
ORF disruption upon sequence inclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=NA C2=0.000
Domain overlap (PFAM):
C1:
PF134991=EF-hand_7=FE(26.6=100)
A:
NA
C2:
PF134991=EF-hand_7=PD(35.4=52.8),PF087265=EFhand_Ca_insen=PU(26.9=34.0)
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
GCGGAATGGGATGATGGAACC
R:
CCTGCTAGGATTTTGAAGGAGGC
Band lengths:
216-767
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]