MmuINT0010456 @ mm9
Intron Retention
Gene
ENSMUSG00000006457 | Actn3
Description
actinin alpha 3 [Source:MGI Symbol;Acc:MGI:99678]
Coordinates
chr19:4861585-4862235:-
Coord C1 exon
chr19:4862170-4862235
Coord A exon
chr19:4861744-4862169
Coord C2 exon
chr19:4861585-4861743
Length
426 bp
Sequences
Splice sites
5' ss Seq
CTGGTGAGT
5' ss Score
10.1
3' ss Seq
CCTGATGTCTATCTCTGCAGGGA
3' ss Score
9.58
Exon sequences
Seq C1 exon
AAGCGGAATGGGATGATGGAGCCCGACGACTTCCGAGCTTGTCTCATCTCCATGGGTTACGATCTG
Seq A exon
GTGAGTGCCATGGCCACTTCAGAAGCATCGTCAGGTCCCCTCCCTCTGCCTGGCCGCCTCCTCACACAAATTACCTTTTCTGCTCATCACACTCACGCAAAGGCTATCTAAGATACTGAGAGGTAAATTAACTAGTCCAGTGTGACCTTAGCTTGGACCATTTTTCCCCCTCTAAGAAACAATGCTAAGTTGCAAAATATCTGAACCATGAAGCAAGAGAGGGAATTGCCACAGGCAAATGGCTACTTCTTTCTGCCTAGCATGAAGGACTCCCTAAAGCCAAACTGAATGTTGTCTTGGGAAGAGAATATCTTGTCACTGGGGTGATATAAGCCAAGTATGAAAAATCCCCAGGAGGGGACATGAGGAGCAAGACCTCTTTCCTTTAGCATGTATGGACACAGTGCCTGATGTCTATCTCTGCAG
Seq C2 exon
GGAGAAGTGGAGTTTGCTCGAATCATGACCATGGTGGACCCCAATGCAGCTGGGGTTGTGACCTTCCAAGCCTTCATTGACTTCATGACCCGAGAGACTGCCGAGACAGACACGGCTGAACAAGTGGTAGCCTCCTTCAAAATCCTGGCAGGAGACAAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSMUSG00000006457-Actn3:NM_013456:19
Average complexity
IR-S
Mappability confidence:
NA
Protein Impact
ORF disruption upon sequence inclusion
No structure available
Features
Disorder rate (disopred):
C1=0.000 A=NA C2=0.057
Domain overlap (PFAM):
C1:
PF134991=EF-hand_7=FE(26.6=100)
A:
NA
C2:
PF134991=EF-hand_7=PD(35.4=52.8),PF087265=EFhand_Ca_insen=PU(26.9=34.0)
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
AAGCGGAATGGGATGATGGAG
R:
TGCCAGGATTTTGAAGGAGGC
Band lengths:
216-642
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Pre-implantation embryo development
- Muscular differentiation time course
- Spermatogenesis cell types
- Reprogramming of fibroblasts to iPSCs
- Hematopoietic precursors and cell types
Other AS DBs: