BtaINT0013502 @ bosTau6
Intron Retention
Gene
ENSBTAG00000018105 | ACVR2B
Description
Bos taurus activin A receptor, type IIB (ACVR2B), mRNA. [Source:RefSeq mRNA;Acc:NM_174495]
Coordinates
chr22:11889100-11889709:+
Coord C1 exon
chr22:11889100-11889243
Coord A exon
chr22:11889244-11889560
Coord C2 exon
chr22:11889561-11889709
Length
317 bp
Sequences
Splice sites
5' ss Seq
AAGGTGAGC
5' ss Score
9.6
3' ss Seq
GCCTGTGCTGTCTCCCGTAGGGC
3' ss Score
12.21
Exon sequences
Seq C1 exon
GACAAGCAGTCGTGGCAGAGTGAGCGGGAGATCTTCAGCACGCCTGGCATGAAGCACGAGAACCTGCTGCAGTTCATTGCCGCTGAGAAGCGAGGCTCCAGCCTGGAGGCAGAGCTGTGGCTCATCACGGCCTTCCACGACAAG
Seq A exon
GTGAGCCTTGCCCTGCGGACCCTGCTCCCGCGGGAGGTGACCATGGGCCCACCGTGGCCTTCCCCCGAGGTCCCCGTCCACGGGTGTGGACACGAGGGTCTGCAGGAAGAACCCCTCTCCCTGGGATCAGTTCTTGCAAACAGGAGTAGTGACTTCATGATTATCACTGTCTGACATCACCCGCTTCCCAGCCCCTCCTGGCCTCGTCGGTGCCAACCTCCTGGTGGGGAGCTCAGCCATCTGACCCACGGGTACTGCCCTCCAGGGGCAGGGCTGGGTCCTGCCCGCGTGCCCAGAGCCTGTGCTGTCTCCCGTAG
Seq C2 exon
GGCTCCCTCACGGATTACCTCAAGGGGAACATCATCACATGGAACGAACTGTGTCACGTGGCAGAGACGATGTCTAGAGGCCTCTCATACCTACACGAGGATGTGCCCTGGTGCCGGGGCGAGGGCCACAAGCCATCTATTGCCCACAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSBTAG00000018105:ENSBTAT00000024095:6
Average complexity
IR
Mappability confidence:
NA
Protein Impact
ORF disruption upon sequence inclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.021 A=NA C2=0.000
Domain overlap (PFAM):
C1:
PF0006920=Pkinase=FE(16.3=100)
A:
NA
C2:
PF0006920=Pkinase=FE(17.0=100)
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
GACAAGCAGTCGTGGCAGAG
R:
GCAATAGATGGCTTGTGGC
Band lengths:
287-604
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]