GgaINT0093018 @ galGal4
Intron Retention
Gene
ENSGALG00000006158 | ACVR2B
Description
activin receptor type-2B precursor [Source:RefSeq peptide;Acc:NP_989648]
Coordinates
chr2:5730269-5731418:-
Coord C1 exon
chr2:5731275-5731418
Coord A exon
chr2:5730418-5731274
Coord C2 exon
chr2:5730269-5730417
Length
857 bp
Sequences
Splice sites
5' ss Seq
AAGGTAACA
5' ss Score
8.92
3' ss Seq
TACAATGTCCTGTTTCACAGGGC
3' ss Score
9.38
Exon sequences
Seq C1 exon
GATAAGCAATCTTGGCAGAGTGAGAGGGAGATTTTCAATACTCCTGGCATGAAGCATGAAAACCTTTTGCAATTTATCGCAGCAGAAAAGAGAGGGACAAACCTAGAGACAGAGCTCTGGCTGATCACAGCGTTCCACGACAAG
Seq A exon
GTAACATATCGTTGCACATTCCTTTGGCGATGGCACAGGGGTGGCTGGCCATGAAGCACAGTGTTTGGTGGCTGATATTCTCCCAGAAGCTCTCCCAGTTGGTCTCCCCTTCTGCAAATGCCCTTCCTTTAGCCTTCAAGGCTTTCCTGCACAAACATCGGATTAAGAAAGGTGGGACCTGGGGAGAGGGAGGTGGCACAATAGGCTGCACACAGCTCACGTACTCAGTGCTTGCCATCTCATAACATGTGGAGATGAGCCAGGGAGAGCTGGGGGTTGGGGCCATTGCATTCCCAACCCAGCCCTTGCAGATAGACTCTGTGTTTGCTTTCGAAGCTGAGGGCATACCTCCTCTTTCTTGAATTGCTTTAGTTATCAAACATGACTAACACTTAAAATAAAACAAACACACACAAACCAAGGGTTGAGCCAGCAGCATTATCCCTCTATTTAATCCAAGGTCTACTGAGTCAATCATTTCCACTACCAGTTGATATGATGCAGCATCTTCTTGCGTGCAGATATTTCCTCTTTCCTAGCCTGTCTGACTTGCTCTTTTTGCAATTACTTTGTCCCTTCCTTCACCAACCTCCCAAGCAGATGAATAGATTTGGGACACATTTTAGATATCCATATACTTTTTGTGCTGTTGGAGGCCAAAGACTCATGAACGCTTCTGAATTTTATTTCTTCTTCTTTTCTCTTTTTTTTAAACATTTGCTAGTTATATTTTTTGCCTGTTAAATGAAGGTTCACATTTCTCAAGCACTCATTAAAACTAAATGAAACCGATGAGTCTGCACATCTGTCACATAGCAATGGCTGTGATTAAGAACATACAATGTCCTGTTTCACAG
Seq C2 exon
GGCTCTCTCACGGATTACCTGAAGGGCAATATCATCAGCTGGAACGAGCTCTGCCATGTTGCAGAAACCATGGCCCGTGGCTTGTCTTACCTCCATGAGGACGTCCCGTGGTGCAAGGGTGAAGGACACAAACCTGCTATAGCACACAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSGALG00000006158:ENSGALT00000009945:5
Average complexity
IR
Mappability confidence:
NA
Protein Impact
ORF disruption upon sequence inclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.042 A=NA C2=0.000
Domain overlap (PFAM):
C1:
PF0006920=Pkinase=FE(16.3=100)
A:
NA
C2:
PF0006920=Pkinase=FE(17.0=100)
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
ATAAGCAATCTTGGCAGAGTGAGA
R:
GCTATAGCAGGTTTGTGTCCTTCA
Band lengths:
286-1143
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]