RnoINT0012797 @ rn6
Intron Retention
Gene
ENSRNOG00000014477 | Acvr2b
Description
activin A receptor type 2B [Source:RGD Symbol;Acc:2028]
Coordinates
chr8:128115085-128115573:+
Coord C1 exon
chr8:128115085-128115228
Coord A exon
chr8:128115229-128115424
Coord C2 exon
chr8:128115425-128115573
Length
196 bp
Sequences
Splice sites
5' ss Seq
AAGGTGAGC
5' ss Score
9.6
3' ss Seq
AGTCGGCTGCCTTCTCTTAGGGC
3' ss Score
7.86
Exon sequences
Seq C1 exon
GACAAGCAGTCGTGGCAGAGTGAGCGGGAGATCTTCAGCACACCGGGCATGAAGCACGAAAACCTCCTGCAGTTCATTGCTGCAGAGAAACGAGGCTCCAACCTGGAGGTGGAGCTGTGGCTCATCACAGCCTTCCACGACAAG
Seq A exon
GTGAGCTACACCCCAGCAAGGCCCCGGGGTGGACAGGGAGGTCCCAACGGTGGCTTTGCCATGAGTCGACCCCCGTGTCAGCCGCACCTCGGTCCCCTCTGCACGCTTGCACCAGGACATTCCCGCTGGGCCTGGGTTGGGTTGCACCCTGTTCTGCATTTGGAGCCTTTGCCCACAGTCGGCTGCCTTCTCTTAG
Seq C2 exon
GGCTCCCTCACGGATTACCTCAAGGGGAACATCATCACGTGGAACGAGCTGTGTCATGTGGCAGAGACGATGTCACGAGGCCTCTCGTACCTGCATGAGGATGTGCCGTGGTGTCGTGGCGAGGGCCACAAGCCTTCTATTGCCCACAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSRNOG00000014477:ENSRNOT00000019777:6
Average complexity
IR
Mappability confidence:
NA
Protein Impact
ORF disruption upon sequence inclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.042 A=NA C2=0.000
Domain overlap (PFAM):
C1:
PF0006920=Pkinase=FE(16.3=100)
A:
NA
C2:
PF0006920=Pkinase=FE(17.0=100)
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
GCATGAAGCACGAAAACCTCC
R:
TGGGCAATAGAAGGCTTGTGG
Band lengths:
244-440
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]