BtaINT0017857 @ bosTau6
Intron Retention
Gene
ENSBTAG00000039302 | ANGPTL6
Description
Bos taurus angiopoietin-like 6 (ANGPTL6), mRNA. [Source:RefSeq mRNA;Acc:NM_001128070]
Coordinates
chr7:15881601-15882138:-
Coord C1 exon
chr7:15882071-15882138
Coord A exon
chr7:15881872-15882070
Coord C2 exon
chr7:15881601-15881871
Length
199 bp
Sequences
Splice sites
5' ss Seq
CGAGTGGGC
5' ss Score
-0.18
3' ss Seq
TGACTTTCTTGCCCTGCTAGGTG
3' ss Score
10.84
Exon sequences
Seq C1 exon
GCCCATGGCAGGATTGTGCAGAGGCCCGCCAGGCAGGCCATGGACAGAGTGGAGTGTATGAGTTACGA
Seq A exon
GTGGGCCGGCACGTGGTGTCAGCATGGTGCGAGCAACAGCTGGAGGGAGGAGGCTGGACTGTGATTCAGAGGCGGCAAGATGGCTCGGTCAACTTCTTCACTACCTGGCAGCACTACAAGGTGGGCACAGGTGGGTGGGGCAGGGCTGGGCAGGGGAAGGGGACCAGCTCCTGCCTTTCTGACTTTCTTGCCCTGCTAG
Seq C2 exon
GTGGGCTTCGGGCAGCCTGATGGGGAATACTGGCTGGGCCTTGAACCTGTGCATCAGCTTACCAGCCGTGGGGACCATGAGCTACTGGTGCTCCTTGAAGACTGGGGAGGCCGTGGGGCACGTGCCCACTATGATGGTTTTTCCCTGGAGCCTGAGAGTGACCACTATCGCCTGCGGCTTGGCCAGTACCATGGAGATGCTGGAGACTCTCTTTCCTGGCACAATGACAAGCCTTTCAGCACCGTGGATAGAGACCGAGACTCCTATTCTG
VastDB Features
Vast-tools module Information
Secondary ID
ENSBTAG00000039302:ENSBTAT00000020787:3
Average complexity
IR
Mappability confidence:
NA
Protein Impact
ORF disruption upon sequence inclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.783 A=NA C2=0.044
Domain overlap (PFAM):
C1:
PF0014713=Fibrinogen_C=PU(2.6=17.4)
A:
NA
C2:
PF0014713=Fibrinogen_C=FE(57.7=100)
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Rat
(rn6)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
GCCATGGACAGAGTGGAGTGT
R:
TGCCAGGAAAGAGAGTCTCCA
Band lengths:
253-452
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]