HsaINT0008024 @ hg19
Intron Retention
Gene
ENSG00000130812 | ANGPTL6
Description
angiopoietin-like 6 [Source:HGNC Symbol;Acc:23140]
Coordinates
chr19:10204025-10204556:-
Coord C1 exon
chr19:10204369-10204556
Coord A exon
chr19:10204296-10204368
Coord C2 exon
chr19:10204025-10204295
Length
73 bp
Sequences
Splice sites
5' ss Seq
AAGGTGGGC
5' ss Score
7.93
3' ss Seq
TGACTTTCCTGCCCTGCCAGGCG
3' ss Score
8.46
Exon sequences
Seq C1 exon
GCCCGTGGCAGGATTGTGCAGAGGCCCGCCAGGCAGGCCATGAACAGAGTGGAGTGTATGAACTGCGAGTGGGCCGTCACGTAGTGTCAGTATGGTGTGAGCAGCAACTGGAGGGTGGAGGCTGGACTGTGATCCAGCGGAGGCAAGATGGTTCAGTCAACTTCTTCACTACCTGGCAGCACTATAAG
Seq A exon
GTGGGCACAGGTGGGCAGAGGCAGGGAAGGGGAGGGAGCCTGTTCTGGCTTCCTGACTTTCCTGCCCTGCCAG
Seq C2 exon
GCGGGCTTTGGGCGGCCAGACGGAGAATACTGGCTGGGCCTTGAACCCGTGTATCAGCTGACCAGCCGTGGGGACCATGAGCTGCTGGTTCTCCTGGAGGACTGGGGGGGCCGTGGAGCACGTGCCCACTATGATGGCTTCTCCCTGGAACCCGAGAGCGACCACTACCGCCTGCGGCTTGGCCAGTACCATGGTGATGCTGGAGACTCTCTTTCCTGGCACAATGACAAGCCCTTCAGCACCGTGGATAGGGACCGAGACTCCTATTCTG
VastDB Features
Vast-tools module Information
Secondary ID
ENSG00000130812-ANGPTL6:NM_031917:4
Average complexity
IR-S
Mappability confidence:
NA
Protein Impact
ORF disruption upon sequence inclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.190 A=NA C2=0.000
Domain overlap (PFAM):
C1:
PF0014713=Fibrinogen_C=PU(28.6=96.8)
A:
NA
C2:
PF0014713=Fibrinogen_C=FE(42.3=100)
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Associated events
Other assemblies
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
TCTTCACTACCTGGCAGCACT
R:
GAAGCCATCATAGTGGGCACG
Band lengths:
167-240
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Genotype-Tissue Expression Project (GTEx)
- Autistic and control brains
- Pre-implantation embryo development
Other AS DBs:
FasterDB (Includes CLIP-seq data)
AS-ALPS (AS-induced ALteration of Protein Structure, links to PINs)
APPRIS (Selection of principal isoform)
DEU primates (Only for human)