MmuINT0015039 @ mm10
Intron Retention
Gene
ENSMUSG00000038742 | Angptl6
Description
angiopoietin-like 6 [Source:MGI Symbol;Acc:MGI:1917976]
Coordinates
chr9:20875166-20875701:-
Coord C1 exon
chr9:20875514-20875701
Coord A exon
chr9:20875437-20875513
Coord C2 exon
chr9:20875166-20875436
Length
77 bp
Sequences
Splice sites
5' ss Seq
AAGGTGTGT
5' ss Score
6.64
3' ss Seq
TCTTCCTCCTACCCTTCCAGGCG
3' ss Score
11.08
Exon sequences
Seq C1 exon
GCCCATGGAGGGATTGTGCAGAGGCTCACGGGGCAGGTCACTGGCAGAGTGGAGTGTATGACCTGCGGCTGGGCCGTCGTGTAGTAGCCGTGTGGTGTGAACAGCAGCAGGAAGGTGGAGGCTGGACTGTCATCCAGAGACGGCAGGACGGCTCTGTCAACTTCTTCACCAACTGGCAGCACTACAAG
Seq A exon
GTGTGTGCTTGTGGTGGGGGTGTCAGAGACTGCTGGGCAGAGAGGACGCCCCCACCCTCTTCCTCCTACCCTTCCAG
Seq C2 exon
GCGGGCTTTGGGCGTCCAGAAGGAGAATACTGGCTGGGCCTGGAACCTGTGCATCAGGTGACAAGCCGTGGGGACCACGAGCTGCTGATACTCCTAGAGGACTGGGGGGGCCGTGCAGCACGCGCCCACTACGACAGCTTCTCCTTGGAGCCTGAGAGTGACCACTACCGTCTGCGGCTTGGCCAGTACCACGGCGATGCCGGAGACTCCCTCTCTTGGCACAATGACAAACCTTTCAGCACTGTGGATAGGGACAGAGACTCATATTCTG
VastDB Features
Vast-tools module Information
Secondary ID
ENSMUSG00000038742:ENSMUST00000043726:4
Average complexity
IR
Mappability confidence:
NA
Protein Impact
ORF disruption upon sequence inclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.127 A=NA C2=0.000
Domain overlap (PFAM):
C1:
PF0014713=Fibrinogen_C=PU(28.6=96.8)
A:
NA
C2:
PF0014713=Fibrinogen_C=FE(42.3=100)
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
CACCAACTGGCAGCACTACAA
R:
CACTCTCAGGCTCCAAGGAGA
Band lengths:
182-259
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Pre-implantation embryo development
- Ribosome-engaged transcriptomes of neuronal types
- Neural differentiation time course
- Muscular differentiation time course
- Spermatogenesis cell types
- Reprogramming of fibroblasts to iPSCs
- Hematopoietic precursors and cell types