RnoINT0017333 @ rn6
Intron Retention
Gene
ENSRNOG00000020603 | Angptl6
Description
angiopoietin-like 6 [Source:RGD Symbol;Acc:1311141]
Coordinates
chr8:21896946-21897482:-
Coord C1 exon
chr8:21897295-21897482
Coord A exon
chr8:21897217-21897294
Coord C2 exon
chr8:21896946-21897216
Length
78 bp
Sequences
Splice sites
5' ss Seq
AAGGTGGGT
5' ss Score
8.23
3' ss Seq
TCTTCCTCCTGCCCTTCTAGGTG
3' ss Score
12.9
Exon sequences
Seq C1 exon
GCCCATGGAGGGATTGTGCGGAGGCCCAGGGGGCAGGTCACTGGCAGAGTGGAGTGTATGAACTGCGGTTGGGCCGTCGTGTGGTACCCGTGTGGTGTGAACAGCAGCAGGAGGGTGGAGGCTGGACCGTCATCCAGAGGCGGCAAGATGGCTCTGTCAACTTCTTCACCAACTGGCAACATTACAAG
Seq A exon
GTGGGTGCTTGGGGTGGGGGTGATGGAGACTGTTCTGGGCAGAAATGATGCCCCCGCCTCTTCCTCCTGCCCTTCTAG
Seq C2 exon
GTGGGCTTTGGACGACCGGATGGAGAATACTGGCTGGGCTTGGAACCCGTGCATCAGGTGACTAGCCGCGGGGACCACGAGCTGCTGATACTCTTAGAGGACTGGGGGGGCCGTGGGGCACGCGCCCACTATGACAGCTTCTCCTTGGAACCCGAGAGTGACCACTACCGGCTGCGGCTTGGCCAGTACCATGGTGATGCTGGAGATTCCCTCTCCTGGCACAGTGACAAACCTTTCAGCACTGTGGATAGGGACAGAGACTCATATTCTG
VastDB Features
Vast-tools module Information
Secondary ID
ENSRNOG00000020603:ENSRNOT00000027963:4
Average complexity
IR
Mappability confidence:
NA
Protein Impact
ORF disruption upon sequence inclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.159 A=NA C2=0.000
Domain overlap (PFAM):
C1:
PF0014713=Fibrinogen_C=PU(28.6=96.8)
A:
NA
C2:
PF0014713=Fibrinogen_C=FE(42.3=100)
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
AGTGTATGAACTGCGGTTGGG
R:
AGCCCAGCCAGTATTCTCCAT
Band lengths:
176-254
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]