DreINT0029668 @ danRer10
Intron Retention
Gene
ENSDARG00000020265 | angptl6
Description
angiopoietin-like 6 [Source:ZFIN;Acc:ZDB-GENE-030131-9735]
Coordinates
chr3:54274549-54279724:-
Coord C1 exon
chr3:54279531-54279724
Coord A exon
chr3:54274820-54279530
Coord C2 exon
chr3:54274549-54274819
Length
4711 bp
Sequences
Splice sites
5' ss Seq
AAGGTGCAG
5' ss Score
3.97
3' ss Seq
TGACTATTGTCTGTACACAGCAA
3' ss Score
7.32
Exon sequences
Seq C1 exon
GGCCATGGCATGACTGTCATAATGTGCTGGAGTCAGGGGAGAAGACAAGTGGCATCTACCTGCTGCGACCACGCAACACCAACCGTCTGCTGCAGGCCTGGTGTGACCAAAGCAGAGCTCAGGGTGGCTGGACTGTTATCCAGAGGAGACAGGACGGCTCCGTCAACTTCTTCAGGACCTGGGACCAGTATAAG
Seq A exon
GTGCAGGAAGCAAAATACTACTTACTTACGTGTACTAAACTTGACATCAGCCCCTTTCACACATACAGACCACACAGGTGATCATGTGTGAACAGGCCCTTTTTGAAAATACCGGTAAATTCGTTTTGGCTATTTTCCCGAAAGAGAAGTTGTAACATTACTAGTAATTTGCCGGAATGCTGCGCTGTGTGAACACAGAAGGAAGACTGCCGGAAAGAGTGTGTGCACGTCTAGAATGTGCTGACGTGAGACGTCTACTTTAGCCAATCAGAGCAGTCACACGCATTCACGTCCGTGGTTTATGAGAATAAAAGCCTTTGAATATTTTTCCAGACACATTTAGCTGCTAGAAATTAGTCAGATAACGTTTATATGTTTATCTTATTGCCAACTGTGTAAATAATTATCGAAAAGATGCTTATGATAAGCCGTTGTTTGTTTACCTTCAAGCTTTGCGTGCCCGTGAAACAGCCCGTGAGTGCCAGCACACACACATATCATGTACATCTCGACATGCGAATATGTTTCTCTATATGTTTTCATCGAAGTTGTTTACAATACTAATCCATCCACAGAGTTTGTAATGTAGTCAAATGTTTACAAATACAAGCGCAGCCATTTAGAGGTCATTTCTGGTTAATGATGTCAGAATTTACCAATAGCATCTGGATGCAGCCTTTATGATGCAAGCTGAGATTGCATCGATGCAATGTCAGACACAATGCATTCAATGGAGTGAGTGACATCACTGTGACGGGTAGGGTTAAAGGTGGGGTTAGGTGAGCGCATTAAAAAGCATTGAATGCAGCTCAGATTGCACTGCACCGAGTCTGCAGCCAGACCCTTCTCGAATTTACCGGTATTTTGGAATGGATGTGTGAATGGTCTTTTCCGGAAAAATTACATAACGTCCTCGCCTGTGTGAACAGCACTTTTTTGAATTTACCGGTAAAGTTTCCACATATTTAGTGGTATCACTGTGGGGCTATTGTTGGCATATATCTAGTGTGTCTTTAATAACATCTGTGATCATTTCCAAAAAAAATTCTCCAAAAAATTCAGCCTCTGAAACTAGTTTTAAACATATTCAGCACCAAAAGAAACACTGTGCAACTTTATGACCATTACAAAATGTTCTGTGTAATGTGTATGCACACTGATGAGCCAAAACATCGGGAAGATTTCATCGATGTTGACAAAGGATGGATTGTTATGGTAAGGTGCCATATTCTGAATATCTCTGAAACAGAATGACTTGTTTCCAGTGCTTGTCAATACCATAGACTGTAAAATATATGGACGTAGTATCCGTGACGTCACCCATAGGTTTCTAAAGAGCGCAAAAGAAGCCACAAGTAGGCGCGGCCAACCGTCGCCATTTTGTTCGCGCGTCATCACACCCACGGCGGGATACCAAACAAGGGCAAATAGGCGGAGAGTGAGCGGAGCTACAGACGCATGCTGCATTTTGCTTGGACCTGGTTCAGACACACTTTACTTTGGGAGAACGCTTAATATTTTATCACCTGTGACTCGTTTGTGTTCTGACCACTTGTGCTTGGTTGTATACTATATCAATAAAGTGTTTAGTCTTTTAAAAACACTGCTGTAACACATTGAGCCACTAAACATTGTTCTTATGACGTTTTTCAACAGGAGGAAAACGCGAATTATTTCCAAACACTTCAGATATAGTCTGTGTTAGTTAATGCAAGACTATTGATGAAATCAAGCATAACACTGTATGACACCACGTCAAATGACTGTTCTAGAGCCTACAGCTAATCAATTCGTCAGATTCTGGAGTGCATTACAGCTCTAAATATAAATATAAACGATAAATGATCTTAAATAAAACAAATACATGTATAGAAATGGTATATAAGTATATAACTTTACTCACATGGGAAACGGAGGCCACGTGAATGGTTTGTGAGCACAATTAAGTTCACTCAGCATGACATTCCATCAAATTAATGTAGGAAACAAGTCCAAAAGACAGTCGACTGTGTAAAGCCACATAAAACAACACAGAAATACGATAAATATGCCGAGTTCAGTGGCTAATCTGCAGGATTCAGCTGAGGTGATGTGACGGCGACCAGCGAGACCTAGCTGTCACTCAAGTGACCACGCCCTTAATTATGCAAACTTAATATAACTTAATATAAAGGAAACGGATGAGTTATAAAAAAATTCACCCCCCTTACAGTTGTCATGAAGGGTAATATTAGCTGTATTAACCAAAATCTTTTTTTGTACCAGGCTGTAAACACCTTTTCTTCTGCTGTAAATTTGGCCATTCTAACAGTGGGCTCAATTGAAATTTGCTCTGTTTTGGAGCCAGGAGCGGCCAAGACTAGCGGAATTTCAGATGAATTGCAGTTTTAGTTACTTCCGTATTGGCTTCCTGAGAGAGAGCGGGAGGTTGCCGCTTGGTCAATACACGAGGGCAATAAAGACAATCTTTTCTGGGCTGAAGGACTGTGACATTGTAATGATGGTTATGGATAGAATGTAACATAACAAATGCATTATATTCTGCTGGTCCTGTGAGTCCTCTAGAGGGGGTGTATTGCTATGTGCAAAGTTCTTCTTATAAAACTTGGGATCCATCATACAAACATTGTTGCAAACCTAGTCCACCTGGATGAAGCCAATTAGAATACATGGTGATGGTTAGAAAGCCTTGATAGACAAAGGCTAGCAAGAAAGTCCAGGATGCCTGGTACTTACTTTGAAGGTCATATTTTAAGTACTACAGAGAGTCAGGACCTCAGGTTAACATTTCATCCAAGGGTCGGTGCTCACTGACAGTATAGAGTCCTCATCCAAAAACTGGGGTACTAGGACCCACACAGACCACAGGGTGAGCACCCATTGGTAGCCTCAACGGCACAAGTTCCAATAGAAGTCTAGTTGCAGCTCACATCCCACAGGACTTAAAGGATCTACTGCTAATGTCAGTATACCACAGGACTTCAAGAGTCAAGGAAAGCCCATTGGTGCTGTTTCAGTGGAATATCAGCCAGGTGGCCATAGTGTTTTAGCACATTAATGTATCCACCATATTATACATGTGATCTAGATCAGGGGTACTCAACTCTGTTCCTGGAGATCTACCTTCCTGCAAAGCTCAGCTTCAACCCTGATCAAACACACATGAACCAATTGATTAGGACTGAAGAACACTTGATGATTTCAGGCAGGTGTGTTTGATATGAGTTTGCAACTGAAAATGCAGAAAAGTAGATCTCCAGGAATAGGGTTGAGCACCCCTGATCTAGATGTACTTCAGTTATCATGCTATCATTGCCATGTTACCTACAGCAGTGGTCCCTAACCCCCGGGCCGATCAATTAGTACCGGGCCGCACAAGAATTAATTATTTTTAAGTTGGCAGATAAAGTAACTTCATTTAAAGCCAAACTGGATTTGTGGGGATGGCGTGTGAACAGAGGCAAATTGGACATGTTTCCAACATTAGCTGGGATTTTGTGTGAGACTGAGTCTGCACCCTCACTCACCAAGCTGGTGCACGATTACCAGTCTTCGCTGTTAAAGGAGTTTGAGCTCTACTTCCCAACCTCAAAGGACCCACAAACGGCCAAGGAATGGATACGTGACCCATTTGTCAACAAACCAGCTAAATCCAGCATGTTTGTGCAAGAAGAAGACCAACTGCTGGAGATCACAAATGACGGTGGCCTTAAAACAGTGTTCGAGACAACAACTCTGCTGGTGTTCTGGATTAAAGTAATGGCAGAAACACTTTCACATGTCGAGATGTACATGATATGTGTGTGTGTGTGCTGGTGCTCACTGGCTGTTTCACGAGCACACGTAAAACTTGGAGGTAACCAAACAGCGGCTTATCATAAGCATCTTTTCGATAATTATTTACACAGTTGCATTAAGAAGAACATATAATCGTTATCTGCCTAATTTCAAGCAGCTAAATGTGTCTGGAAAAATATTCAAAGGCTTTTATTTTCATAAACCGCGCGGACGTGAATGCGTCTGACTGTTCTGATTGGCTAAAGCAGACGTCTCATGTCAGCACATTCTAGACGTGCACACGCTCTTTCTGGCAATCTTCCTTCTGCTATTACCCCCAGATGTGACCATCTCGTTGCAAAGAAACAAGCTCAGGGCTCTCATTGATTTAGCGCTACGGACAGTTTTTGATGTTATAATATGTTATATTGTTGGAGCAATTTGTTAATAAAGTTATTACTTCCTAATGTTATAATAGCATTGTAATGTTGGAGCAATGTGCTAATAAAGCTCCACATGAGTACACAGTGGATTCACGTTTATTATTATTATTATTATTTCAACCCACCGGTCCGCAGTAAAATTGTCAAGCGTTGACCAGTCCGGAGTTAGAAAAAGGTTGGGGACCACTGACCTACAGTACCAATAGCATAGGATAGTAAAATGTGTATGTGTAATTTCAGAATCTCACCAGAACTATTAGATTATTTCAGTTCACTTGTCATTTTAATTTTACAAGCCACTATCTATTACCCATTGGTAGCAAGTAATTAGTCAATGGACCTTCATGGGATGGGATTAGCTCTAGCAGGCCGTACTTTTAAGCCGTTATGCCACACAAGCTGCAGAATAGTGTTCACTCCTGAGGTAAAAAAGCATCAGCTGTAATGCAATTATTATTCAAATTAACAACATGACTATTGTCTGTACACAG
Seq C2 exon
CAAGGCTTTGGGAATCTGGATGGAGAATACTGGCTGGGTCTTGAGCACCTGTACTGGCTCACCTCTCAAGCCACCTACAAGCTGCGAGTAGCTATGGAAGACTGGCAAGGGCGACAAGTCTATGCAGAGTATGACAGCTTTCGGGTGGAACCAGAGAGCGACTGGTATCGTCTACGGTTAGGCAGCTATCAAGGTACTGCGGGAGACTCCCTCTCATGGCACAACAATAAAGCGTTTACCACTCTGGACCGTGATAAGGATGCCTACACAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSDARG00000020265:ENSDART00000018044:4
Average complexity
IR
Mappability confidence:
NA
Protein Impact
ORF disruption upon sequence inclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.123 A=NA C2=0.000
Domain overlap (PFAM):
C1:
PF0014713=Fibrinogen_C=PU(29.0=95.4)
A:
NA
C2:
PF0014713=Fibrinogen_C=FE(42.1=100)
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Associated events
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
No suggested primer sequences
R:
No suggested primer sequences
Band lengths:
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]