BtaINT0017914 @ bosTau6
Intron Retention
Gene
ENSBTAG00000002392 | ANK2
Description
ankyrin 2, neuronal [Source:HGNC Symbol;Acc:HGNC:493]
Coordinates
chr6:13474720-13475806:-
Coord C1 exon
chr6:13475744-13475806
Coord A exon
chr6:13474819-13475743
Coord C2 exon
chr6:13474720-13474818
Length
925 bp
Sequences
Splice sites
5' ss Seq
GCGGTAAGG
5' ss Score
9.63
3' ss Seq
CTCTTTCGCTCGCTCTTCAGAAT
3' ss Score
9.8
Exon sequences
Seq C1 exon
GGCCACACGCACATCATCAATGTTTTGCTGCAGCACGGGGCCAAGCCCAACGCTACCACCGCG
Seq A exon
GTAAGGGGGCGCCGGCTGCCCCTCTTTCTCTTTGATTGACTTAGAATCCCCCTTCCCGGGAGCCGCTTGGCGGAGCTGAGTCCCCCAACCCCCCACATCCTTCTTAAACCTCCGCACTCGGGGGGAAAGCCCAGGATTTCCAGAAATCAGCATGTGATTTCTGAGAGCGCTGGTCCCAGGAGGGAGCGCAGCGTCCTGACTCAGTCTTCCCTCCCGGGAGGGGGCCCCGGGCTCGGGCTGCGGAAACTGGCTCGGCTTCCAGCTGGCTCTCGGCTGGGAGCGGAGTCCACCCCTCCCGCCCGATCTTCTTAAGGGAGTACGCTTTCCGAGGCCGCTGGCTCCAACGGAGCTCTTTGGGATGTTGAGCCATTGAAATGTAAACTAAGCGGTGCAATTAAACCAACCGAGATCCCCAGTGGCCTGGCCTGGGGCCTCAGTTGCTTGTTTGTGTTCTTTTGCTGCCCGGGGAACTTTTGCACAGCTGTAGCTAAATATGTTGCCGCGTTCCCTGTGGTAACATCTTACCTGCAGCAGATGGCCTGACTTCTGATGAGGACTGAGTGTACTTGATTCTTGAATAGTTTTCTTCGGAGGCCTCCTTCTGGATTCAAAGGTGACTCTCCTAAGCACAGTACAGAATTCGGAGCGCTAGCTCGACAACCTCAGGGTTAAAGCAATCGAGTGCTTCTTATTAGAGCAGGCAGATGCAGCTTGTTGTGTTACCATGGTGACCTGGGCTATAGTTTGAAGAAGTTACAAAGAAGATTCAGATGTAATGGTAAAAACTAGTGATTTTCCTAAGCTGTGCCTTGTTTTGGAAGAAAATGCTGGCTCATGTGGAGCCGCGAGTGAGCTCATTGGCTCACCCCGCCATCCCCCCACCCCGCTCTCACTTGCCTCTCTCTCTCTTTCGCTCGCTCTTCAG
Seq C2 exon
AATGGCAACACTGCCTTGGCGATTGCTAAGCGTCTGGGCTACATCTCGGTGGTGGACACCCTGAAGGTTGTAACGGAGGAGGTCACCACCACCACCACG
VastDB Features
Vast-tools module Information
Secondary ID
ENSBTAG00000002392:ENSBTAT00000003097:29
Average complexity
IR
Mappability confidence:
NA
Protein Impact
ORF disruption upon sequence inclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.111 A=NA C2=0.121
Domain overlap (PFAM):
C1:
PF127962=Ank_2=FE(30.3=100)
A:
NA
C2:
PF127962=Ank_2=PD(42.4=84.8)
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Associated events
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
No suggested primer sequences
R:
No suggested primer sequences
Band lengths:
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]