MmuINT0015100 @ mm9
Intron Retention
Gene
ENSMUSG00000032826 | Ank2
Description
ankyrin 2, brain [Source:MGI Symbol;Acc:MGI:88025]
Coordinates
chr3:126700771-126701370:-
Coord C1 exon
chr3:126701242-126701370
Coord A exon
chr3:126700870-126701241
Coord C2 exon
chr3:126700771-126700869
Length
372 bp
Sequences
Splice sites
5' ss Seq
TTGGTGAGC
5' ss Score
7.43
3' ss Seq
CCCTCTTTCTCTCTCTTCAGAAT
3' ss Score
13.54
Exon sequences
Seq C1 exon
GGCTGGATGCAGCCAGAATTGCTAGCTTGTATAGTTTGTGCAGCACTGGAGATCCTGCAGCGCAGAAGCTAAATCTGTCACTGGGTCCCTATGGTAACATCTTACCTGCAGCAGATGGCCTGACTCTTG
Seq A exon
GTGAGCGATGAGTATACCAGGTTCTCCCTAGTAGTTCTGGCAGATGCCACCCCCAGTTTGAAAGGTGGCTTCATAAGGGCAGTGTAGCATTTGGAACTGCTCAACAACCTCGGGGTTAAAGCATCAAGTGCTTCTTATTAAAAAAGAGCAGGCAGATGCAAGCTTGTTGTGTTACCATGGTGACCGGGGCTATAGTCTAAAGAAGTTACAAAGACAGATTTAGATGTAATGGTAAAAACTAGTGATTTTCCTGAGCTGTGCCTTGTTTTGGAAGGAAGTGCTGGCTCATGCCGCGCCACGGGTGAGCTCACTGGCTCTCAAGGCAGTCCTCCCTAGCCTTTCTCACTCTTTCCCCTCTTTCTCTCTCTTCAG
Seq C2 exon
AATGGTAACACGGCCCTGGCGATTGCTAAGCGGCTGGGCTACATCTCCGTGGTTGACACCCTGAAGGTTGTGACTGAAGAGGTCACCACCACTACCACG
VastDB Features
Vast-tools module Information
Secondary ID
ENSMUSG00000032826-Ank2:NM_178655:1
Average complexity
IR-S
Mappability confidence:
NA
Protein Impact
5' UTR
No structure available
Features
Disorder rate (Iupred):
C1=NA A=NA C2=0.121
Domain overlap (PFAM):
C1:
NA
A:
NA
C2:
PF127962=Ank_2=PD(41.8=84.8)
Main Inclusion Isoform:
NA
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
TGGATGCAGCCAGAATTGCTA
R:
GTGGTAGTGGTGGTGACCTCT
Band lengths:
224-596
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Pre-implantation embryo development
- Muscular differentiation time course
- Spermatogenesis cell types
- Reprogramming of fibroblasts to iPSCs
- Hematopoietic precursors and cell types
Other AS DBs: