DreINT0007734 @ danRer10
Intron Retention
Gene
ENSDARG00000009026 | CR388002.1
Description
Uncharacterized protein [Source:UniProtKB/TrEMBL;Acc:E7F4G7]
Coordinates
chr1:13424837-13425115:+
Coord C1 exon
chr1:13424837-13424935
Coord A exon
chr1:13424936-13425016
Coord C2 exon
chr1:13425017-13425115
Length
81 bp
Sequences
Splice sites
5' ss Seq
ATGGTATGA
5' ss Score
6.56
3' ss Seq
CAACATTCTTTCTCCCTCAGAAC
3' ss Score
9.02
Exon sequences
Seq C1 exon
AATGGTTACACACCACTTCATCAAGCTGCTCAACAGGGAAACACACACATTGTCAATGTCCTCCTGCAGCACGGAGCTAAGCCTAATGCTGTTACCATG
Seq A exon
GTATGAGCAACACTTGCACTCCCTGAAATCATCTTAATTCTGTATGTGACTCCTTTAACCTCAACATTCTTTCTCCCTCAG
Seq C2 exon
AACGGAAACACTGCACTCTCTATTGCGAAGCGTCTGGGGTACATCTCAGTGGTGGACACTCTGAAAGTTGTTACTGAGGAAATCATCACAACCACAACT
VastDB Features
Vast-tools module Information
Secondary ID
ENSDARG00000009026:ENSDART00000021693:21
Average complexity
IR
Mappability confidence:
NA
Protein Impact
ORF disruption upon sequence inclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.303 A=NA C2=0.030
Domain overlap (PFAM):
C1:
PF127962=Ank_2=PD(32.6=90.9)
A:
NA
C2:
NO
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
TGCTCAACAGGGAAACACACA
R:
TGTGGTTGTGATGATTTCCTCAGT
Band lengths:
169-250
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]